Tcri013103.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema cristinae
Gene Symbol
-
Assembly
GCA_002928295.1
Location
CM009477.1:49586912-49595645[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 3.2e-05 0.0047 18.7 0.0 2 23 11 32 10 32 0.97
2 25 0.0026 0.38 12.7 2.2 1 23 77 99 77 99 0.98
3 25 0.31 45 6.2 2.1 1 23 105 127 105 127 0.92
4 25 3e-06 0.00044 22.0 4.2 1 23 133 155 133 155 0.98
5 25 0.00045 0.066 15.1 2.3 1 23 165 187 165 187 0.97
6 25 1.8e-05 0.0027 19.5 0.3 1 23 193 215 193 215 0.98
7 25 1.1e-07 1.6e-05 26.5 1.7 1 23 221 243 221 243 0.99
8 25 5.3e-06 0.00078 21.2 0.9 1 23 249 271 249 271 0.99
9 25 0.16 23 7.1 0.3 1 13 277 289 277 290 0.91
10 25 0.00017 0.025 16.5 1.4 1 20 320 339 320 340 0.96
11 25 0.0089 1.3 11.1 5.5 1 23 348 370 348 370 0.98
12 25 0.58 85 5.3 0.5 3 23 376 396 376 396 0.97
13 25 0.018 2.6 10.1 0.4 2 23 403 424 402 424 0.89
14 25 6e-07 8.7e-05 24.2 2.2 1 23 430 452 430 452 0.98
15 25 0.093 14 7.8 1.2 1 23 462 484 462 484 0.90
16 25 6.9e-05 0.01 17.7 0.1 1 23 490 512 490 512 0.98
17 25 8.4e-06 0.0012 20.6 0.3 1 23 518 540 518 540 0.98
18 25 1.1e-05 0.0017 20.1 0.8 1 23 546 568 546 568 0.98
19 25 0.39 58 5.9 0.7 3 23 576 601 574 601 0.83
20 25 4.7e-08 6.9e-06 27.7 1.1 1 23 607 629 607 629 0.98
21 25 0.05 7.3 8.7 1.1 1 23 639 661 639 661 0.96
22 25 2.9e-06 0.00043 22.0 0.7 1 23 667 689 667 689 0.99
23 25 8.2e-08 1.2e-05 26.9 1.3 1 23 695 717 695 717 0.99
24 25 1.1e-05 0.0016 20.2 0.8 1 23 723 745 723 745 0.98
25 25 0.0002 0.03 16.2 4.2 1 23 751 773 751 773 0.98

Sequence Information

Coding Sequence
ATGTCTCACTCGGGCATTGCTGTCATGATGGTGTGTGATGTGTGCGGGGAGAATTTCAGCAACCCGGCCGGGTTGATCTGGCATCGCAGGTTGCATAGCACTAGTAGAGAAGGTAGAACTACTAAAAAACCTGCCTCGTGTGAAGCCCCAAAGCCAAGTAATTCCTCACAAAAAGCTCCACATCCGATGGTGAGAGACCCGCGAAGAAGAGCCAGAGGACTGAAACAGCACACATGCGATATTTGCGGCTATTCCAGCAAGAGCAAGTCCTTTGTAGCCATGCACAGGAAGATGCACTACAACGAATACAAGTTCTATTGCAGGATATGCTCTAAAGGATACAACTCGGTCAAGTTACTTCACGACCACGAGTTTCTACACACCGGCGTCAAAGCTTTCCAATGTGACCAGTGCGGGAAAAGGTTTTCTTCCAGGCACAATTTAGAATCTCATAAAAAGCTTCACATACAAGATTTTGTGGATAACCCCAATTTCTATTGTGAATTTTGCGGTAAGAGTTTCCTGTACAGCAAGTCTCTGAGGAGGCATCGAGACATTCATTTGGGGGAGAATAAGTTTGAATGCGATATATGTGGTAAGATGCTGAACTCTAAGGAGTACATGAAGGTTCACTTGCGAATACACAAAGGAGATAAACCTTACGTTTGTGACATGTGCGGGAAGGCCTTTGTCACGAACAAGCACTTGACGATTCATCGACGCACACACACGGGAGAAAAGCTCTATACCTGCGGTGTTTGCAACAAGTCATTCACGCAGGTTGGGTACTTGACGATACACAAACGCTCGCATACGGGTGAGAGACCGTACCACTGTGATGTGTGCGGCAAAGACTTTGCCTCCAAATTACGGAAACGCAAGAGAGTCTCCACCGCGCCAGCAAATGTCCTGGGTTCTTCTATAGACACCCCTAGCGATTGGGACAGGATCAAGATATATAAATGCAACGTTTGCGGTAAAATCTGTAAGACTCTGTCCCTTCTCAGGGAGCACACATATTGTCACGTCACTGAGAGGTCCTTTTCTTGTGACTTGTGCAACAAGAAGTTCAAATCAAAGAAACGTGTTCACAACCACAGACAAGTGcactttaaaaaacactggTGTGATATCTGCGGGTATACCTCCGAGAAGAAAGTGTACATAGACACTCACAAAAAAATgcactataatatttacaaccTCTACTGCGGCATATGTTCGAAAGGTTTCAATACTGAGAAGTTGCTTCATATACATGAAGGGCTACATACCGGGGTGAAACCTTTCAAATGTGATGAATGTGAGAAAGCGTTcacttccaaatataatttattgaaacacaaGAGACTTCATGACCCCACGTACATAAACAGTCCAAAATATTACTGTGAGTTTTGTGATAAATCTTTCCTGTACGTTACTGTGTTGAACAAGCACAGGAGCGCCCATCTTGGCGAGAACAGGTTCGAATGTGACTTGTGCGGGAAGGTGGTCAACTCAAAGGCGTCCATGAGAACTCACCTGCAGGTTCACAGCGGAGAGAAGCCCTTTGTCTGTGATGTGTGCGGTAAGGCATTTTTGACGAACAAGAACTTGGTGGTGCATAGACGGACGCATACGGGGGAAAAGTTGTACTCTTGCAGCGTGTGTGAAAAGTCGTTCACGCAGGTGGGCTATTTGAACATACACAAACGTTCGCATACGGGTGAGCGGCCGTACCTCTGTGATGCCTGCGGAATGGACTTTGCTTCTAAGTGTTTCAATTCCGAGAAACTTCTAAAGAAACACGAAGAACTACATTCCGGTATAAAGCCATTTCAATGCGAAGAGTGTGGTAAACCGTTTGCTTCAAAGTATAACCTACAGAAACATAAAAGGCTTCACGATCCAGTGTTTAGAAACAATCCAAAATACTATTGTGAGTTTTGTGGTAAAGGCTTCTTATACACGACTGTACTAAACAAACACCGAAGCATCCATATGGGCGAGAACAAGTTTCAGTGTGACCTGTGCGGAAAGACGCTCAACTCTAAGGCGTACCTAAGGACGCACTTACGCATACACAGTGGCGAGAAGCCTTATGTTTGTGACGTGTGTGGCAAAGCTTTTGTGACGAACAAACACTTGACGATCCACCGTCGCACACATACCGGTGAGAAGCTATATGTGTGCAATGTATGTAACAAGTCTTACACGCAAGTGGGTTACTTGACCATCCACAAGCGCTCACATACGGGCGAGCGACCGTACCACTGTGAGGCGTGCGGCAAGGAATTTGCTTCCAAGTGTCAGCTGAACTCTCATCAGAAATCTCACGCTAGAGTTCATCAACGAAGAATCGTGTTAATCAATTGA
Protein Sequence
MSHSGIAVMMVCDVCGENFSNPAGLIWHRRLHSTSREGRTTKKPASCEAPKPSNSSQKAPHPMVRDPRRRARGLKQHTCDICGYSSKSKSFVAMHRKMHYNEYKFYCRICSKGYNSVKLLHDHEFLHTGVKAFQCDQCGKRFSSRHNLESHKKLHIQDFVDNPNFYCEFCGKSFLYSKSLRRHRDIHLGENKFECDICGKMLNSKEYMKVHLRIHKGDKPYVCDMCGKAFVTNKHLTIHRRTHTGEKLYTCGVCNKSFTQVGYLTIHKRSHTGERPYHCDVCGKDFASKLRKRKRVSTAPANVLGSSIDTPSDWDRIKIYKCNVCGKICKTLSLLREHTYCHVTERSFSCDLCNKKFKSKKRVHNHRQVHFKKHWCDICGYTSEKKVYIDTHKKMHYNIYNLYCGICSKGFNTEKLLHIHEGLHTGVKPFKCDECEKAFTSKYNLLKHKRLHDPTYINSPKYYCEFCDKSFLYVTVLNKHRSAHLGENRFECDLCGKVVNSKASMRTHLQVHSGEKPFVCDVCGKAFLTNKNLVVHRRTHTGEKLYSCSVCEKSFTQVGYLNIHKRSHTGERPYLCDACGMDFASKCFNSEKLLKKHEELHSGIKPFQCEECGKPFASKYNLQKHKRLHDPVFRNNPKYYCEFCGKGFLYTTVLNKHRSIHMGENKFQCDLCGKTLNSKAYLRTHLRIHSGEKPYVCDVCGKAFVTNKHLTIHRRTHTGEKLYVCNVCNKSYTQVGYLTIHKRSHTGERPYHCEACGKEFASKCQLNSHQKSHARVHQRRIVLIN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-