Tcri013092.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49547513-49554938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 4e-05 0.0058 18.4 2.9 1 23 9 31 9 31 0.97 2 23 0.0018 0.26 13.2 3.5 1 23 38 61 38 61 0.94 3 23 0.00075 0.11 14.4 3.4 1 22 67 88 67 91 0.90 4 23 7.3e-06 0.0011 20.8 1.5 2 23 98 119 97 119 0.96 5 23 1.7e-07 2.4e-05 25.9 0.3 2 23 126 147 125 147 0.97 6 23 7.7e-06 0.0011 20.7 2.3 1 23 247 269 247 269 0.97 7 23 0.00011 0.016 17.0 3.1 1 23 275 297 275 297 0.97 8 23 0.00068 0.1 14.6 1.6 1 23 303 325 303 325 0.98 9 23 0.0082 1.2 11.2 5.1 1 23 331 353 331 353 0.96 10 23 0.0022 0.32 13.0 0.4 1 23 359 381 359 381 0.95 11 23 0.00066 0.096 14.6 6.1 1 23 390 413 390 413 0.98 12 23 4.5e-05 0.0066 18.3 0.9 2 23 422 443 421 443 0.96 13 23 1.8e-07 2.6e-05 25.8 0.4 2 23 450 471 449 471 0.97 14 23 2.7e-07 4e-05 25.3 1.8 1 23 477 500 477 500 0.97 15 23 0.0029 0.43 12.6 3.3 2 23 572 593 571 593 0.97 16 23 1.6e-05 0.0024 19.7 2.2 1 23 599 621 599 621 0.98 17 23 2.6e-05 0.0038 19.0 2.2 1 23 627 649 627 649 0.98 18 23 2.8e-05 0.0041 18.9 2.0 1 23 655 677 655 677 0.96 19 23 0.00081 0.12 14.3 0.5 1 23 683 705 683 705 0.95 20 23 0.00036 0.053 15.4 3.9 1 23 715 737 715 737 0.98 21 23 4.4e-06 0.00064 21.5 0.4 1 23 745 767 745 767 0.98 22 23 2.7e-05 0.004 19.0 1.4 2 23 774 795 773 795 0.97 23 23 3.8e-06 0.00055 21.7 2.2 1 23 801 823 801 823 0.98
Sequence Information
- Coding Sequence
- ATGTCTCACAGCGACGACCGCAATTTCGACTGTTCCATTTGTAAGAAGAAGTTCAAGCGAGACAAGGACTTGAGGAATCACTTGACGACTCACAACAGGGAACACATGAGGTATTTCTGCAACTCTTGCGACTACGTGTGCAATCGTAAATCCAACTTGGAACTCCACCGCGTTCGAAGACACTCCAAGGAGTTCAGTTTTTTCTGCGACATTTGCGGCAAAGGTTTCTGTTCCGACTCTCAGCTGCGATACCACCGTAATAACAAGTCTCACACGGGTGAGAGTCAGTGCGTATGCTCGGTGTGTGGCAAGACAATCTCTAACAAGTACAATCTCAAAGTGCATGTTCAGACACACACACCGGACAAGCAGATCGTGTGTGATGTGTGCGGCAAGACGTTCACGCAGATGAGCAATCTCAAGATCCACTATCGCATCCATACAGAATCATCGAAAGAAGAAAATAGTTTGGCAACACAGTCGTCAAATGTAGAATATATGTTGGTGCCACAGTCTTCAACTGTAGAAAATACTCAATTACCCCAATTGCCAAAAGAAGAAGATATGTTGGTACAGCAGTTATCTgaagaggaagaagaagaagatgaaAATATGATCTTACCACACATGCTCGAGGACGATAGGGATATGTACTGTGTTGATTTGGAGCAAGAGTCAATTTTCACTTCCATTGCTAGTACTAAAGAAAAGAGTGCAACGTCTCGAAAACCCGTGATTCATAAGTGCAAAATTTGCGGTAGAGAGTTCAACAGGAAAAATGGTCTAACGAGACACAAGGCAGTGCACAGTGCTATTCGTCCTTACGAGTGCCCTACCTGTGATAAACGGTTCAAGAGAAAATGTGAACTAGACCTCCACAAAGTAACACACACCGATGCTAAACAGTATGCCTGTGATATATGCAGCCTGGTTTGCAACCGAAAAGGTAATCTTGACTCTCATCGTAAGAGACATTTCAACGCGTTCACTCATTTCTGTAGCGTGTGCACCAAGGGGTTCTATGACAGTTTCACCATGAAAAGCCACAAGAGGACACACAACAAACTGAAACCTTTCCTTTGTGATCTTTGCGGCTGGAAATTCACGACCGGCGCTCAGATGGCGAAACACAAGCTTAAACACGCCCCCGGTTACAAGTCTGAGTTGTTCAGGTGCGACGACTGTGATAAATGTTGCCTGACAAAGTCAAATTTGATGTCACACGTCAGACGGAGACACGCCGCCGAGGTGGTACCTCAGTGTATTTGCGACATTTGCGGTAAATCGTTATCCTCTAAGGAGTACCTCGTACTTCACAGACGCATACATACAGGAGAAAAACCACTGTCTTGTGATGTGTGCGGAAAGGCGTTCACTCAGGCCAAGTATCTGAAAGTTCATCAGCGCACCCACACGGGAGAGAGACCGTTCTCTTGCAATGTCTGTGAGAAACGTTTTACCCAGCGAAGCAGTTTAAATGCGCACATGAAATCATACCACAAGTGCACTAAACTGCTTAACCTAAATTACTGTGCCTTCCACGACGACGGTTTTGTTCCTTCCAAAGAGATAACACCAAAAACAGCCAAGTCTTCCATTGATCAGATAAGTTTGGCTCATGTCAAAGAAGAGACCATTGAAAAACTCGCCTCAGATTCAACGTTAAAATGTGAAACTTATCCGTTGGACTTGTCGCCTCAGATTCCCACAAATAAATGTGACATTTGTAACAAAACATATCACAAGAAATCCGATCTCGACtatcataaaataacacacagcGATGTTCGGCCATTTGAGTGCTCTGTTTGTAACAAAAGATTCAAGAGAAAATATGAAGTGACTGTTCACAAGTTAACACACACTGGTGACCTGAAATATTCCTGCGATATCTGTAACTTTGTGTGTAACCGTAAAGGGAATCTTGAGGCTCATCGCAAAAGACACATGAATGAGTTTGACCATTTCTGTGATATATGCGGTAAAGGATTCTACAACAATTTCAACTTGCAAGGACACAAAAGAGTGCACATCGGGTTGAAACCTTTCCTCTGTGATATGTGCGGTTTGGGATTTTCATACAAAGCAGCCAtgaaaaaacataaacttaGTCACAATCCCGGATACAAGCCTAAACCAAAACACGAGTGCGACATTTGCGGCAAATGTTTCCTGTCAAAGTCGAGGCTATCGGTCCACATTAAGCGGCATTACGGGGAGGAGTCACCCGGGTTTATTTGCGACTTTTGCGGCAAAACGGTGTCGTCGAAAGACTCGTTGGTTACCCATCAGCGCATACATACTGGGGAGAAGCCCCTGTCTTGTGATATTTGTGGGAAGGCGTTCAGCCACgttaaatatgtgaaagttCATCGCAGAACTCATACGGGAGAACGGCCATATTCTTGTGACGTTTGCCAGAAAACTTTCACCCAACGAAATAGTCTTACTGCACATAAGAAGTCTcacaaataa
- Protein Sequence
- MSHSDDRNFDCSICKKKFKRDKDLRNHLTTHNREHMRYFCNSCDYVCNRKSNLELHRVRRHSKEFSFFCDICGKGFCSDSQLRYHRNNKSHTGESQCVCSVCGKTISNKYNLKVHVQTHTPDKQIVCDVCGKTFTQMSNLKIHYRIHTESSKEENSLATQSSNVEYMLVPQSSTVENTQLPQLPKEEDMLVQQLSEEEEEEDENMILPHMLEDDRDMYCVDLEQESIFTSIASTKEKSATSRKPVIHKCKICGREFNRKNGLTRHKAVHSAIRPYECPTCDKRFKRKCELDLHKVTHTDAKQYACDICSLVCNRKGNLDSHRKRHFNAFTHFCSVCTKGFYDSFTMKSHKRTHNKLKPFLCDLCGWKFTTGAQMAKHKLKHAPGYKSELFRCDDCDKCCLTKSNLMSHVRRRHAAEVVPQCICDICGKSLSSKEYLVLHRRIHTGEKPLSCDVCGKAFTQAKYLKVHQRTHTGERPFSCNVCEKRFTQRSSLNAHMKSYHKCTKLLNLNYCAFHDDGFVPSKEITPKTAKSSIDQISLAHVKEETIEKLASDSTLKCETYPLDLSPQIPTNKCDICNKTYHKKSDLDYHKITHSDVRPFECSVCNKRFKRKYEVTVHKLTHTGDLKYSCDICNFVCNRKGNLEAHRKRHMNEFDHFCDICGKGFYNNFNLQGHKRVHIGLKPFLCDMCGLGFSYKAAMKKHKLSHNPGYKPKPKHECDICGKCFLSKSRLSVHIKRHYGEESPGFICDFCGKTVSSKDSLVTHQRIHTGEKPLSCDICGKAFSHVKYVKVHRRTHTGERPYSCDVCQKTFTQRNSLTAHKKSHK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -