Tcri013124.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009477.1:49786707-49801909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.7e-07 6.8e-05 24.5 0.6 2 23 9 30 9 30 0.97 2 24 6.1e-07 8.9e-05 24.2 1.6 3 23 38 58 36 58 0.97 3 24 0.16 23 7.1 2.5 1 14 64 77 64 81 0.89 4 24 3.5e-06 0.00051 21.8 1.0 2 23 84 105 83 105 0.96 5 24 1.6e-07 2.4e-05 26.0 2.3 1 23 132 154 132 154 0.98 6 24 1.2e-05 0.0018 20.0 0.6 2 23 172 193 171 193 0.96 7 24 0.02 3 9.9 1.5 1 14 199 212 199 215 0.91 8 24 0.0056 0.83 11.7 3.7 1 23 216 238 216 238 0.96 9 24 3.3e-06 0.00048 21.9 0.5 3 23 246 266 245 266 0.98 10 24 5.2e-07 7.6e-05 24.4 1.6 3 23 274 294 272 294 0.97 11 24 0.89 1.3e+02 4.8 1.8 1 14 300 313 300 314 0.89 12 24 4.7e-07 6.9e-05 24.5 0.4 2 23 333 354 333 354 0.97 13 24 0.00046 0.068 15.1 0.5 1 17 360 376 360 376 0.94 14 24 6.3e-06 0.00092 21.0 0.4 1 23 416 438 416 438 0.95 15 24 1.1e-05 0.0016 20.2 0.6 3 23 446 466 444 466 0.96 16 24 1.6e-05 0.0023 19.7 0.7 2 23 473 494 472 494 0.96 17 24 6.9e-05 0.01 17.7 2.4 1 23 500 522 500 522 0.98 18 24 0.18 27 6.9 4.5 1 23 526 550 526 550 0.94 19 24 4.4e-05 0.0064 18.3 0.9 1 23 556 578 556 578 0.97 20 24 9.2e-05 0.013 17.3 0.8 1 23 587 609 587 609 0.99 21 24 0.00054 0.079 14.9 0.4 1 23 615 637 615 637 0.95 22 24 1.3e-06 0.00019 23.1 1.1 2 23 644 665 644 665 0.97 23 24 1e-07 1.5e-05 26.6 2.4 1 23 671 693 671 693 0.98 24 24 0.0023 0.34 12.9 1.0 1 23 699 721 699 721 0.98
Sequence Information
- Coding Sequence
- ATGCACACCGGAGAGAAACCAGAAGTCTGCAACTTGTGCGGCAAGATGTTCGCCCGATTGACCACCCTGCGCATTCACATGCGCACGCACACAGGAGAGAAACTTTACGGGTGTAAAGATTGCGGAAAAAAGTTTACCCAGAGCAGCACGCTCACCATACATAGACGCTACCATACGGGGGAGAGACCATACCAATGTGGTGTCTGTGATAAGGATTTTTGCAACAGCCACGGCACGAAGAGGAACTTGCCTTGCAAGACTTGCGGCCGTAGATTCAGGACGCTGTCTGACCTTCGGAATCACGAAAGGCTACATACGGGAGAAGGTGTGTTCACCTGTGACAAGATGACGACTCTGCATGTTCACATGTGCACCCATACGGGAGAGAAACTTTACAGCTGTAACGATTGTGGCAAGAGGTTTACTCAGAGCAGCACGCTCAACATACATAAACGCTACCATACGGGGGAAAGACCGTACCATTGTGAGCGCCACAGCGCCGAGAAGAACTTACCTTGCGAGACGTGCGGTCGCAAGTTCCGAACAACGTACGCCCTTCGGAGTCACATAAAACTACATACAGGAGACGGAGTGTTCACCTGTGACAAATGCGAGAAAACCTTTCGTCACAAAGGGGAACGTAACTATCTGTGCCATCTTTGCGGCAAGAAGTTCCACGAGAAGCAGACTCTCTTGCTTCACGGGCGAGTCCACACGGGTGAGAAACCGGAGATATGCAGCTTGTGTGGCAAGGAGTTCGCCCGAATGACGACCCTGCGCGTTCACATGCGCACACATACAGGAGAAAAACTGTACGGGTGTAAAGATTGCGGGAAAAGGTTTACCCAGAGCAGCACGCTCACCATACATAGGCGCTACCATACAGGGGAGAGACCGTACCATTGTGGTGTCTGCGAGAAGAAGTTTGTGTCTAAGTTCCACGAAAAAGTAACCATGGTACTCCATCGGCGTGCTCATACCGGGGAGAAACCGGAAGTTTGCAGCGTTTGTGGCAAAGTGTTCGCCCGGATGACGACTCTGCGCGTTCATATGCGCACACATACGGGCGATAAACTTTACAGCTGTGAAGATTGTGGCAAGAAGTTTACTCAGCGTGGCTCTCTTAACCCTCCCCCTGTAATTCAAGGTCAAGTTGACAATTCATACGAAGATCAGAAAAAAGGGAATAAATCAATCACTATTAGAAATGTACAAACTAATAACAAAcaagatgtaaataaaaaattcaattgtAAGGATTGTGACaaagtatttgaaaacaaagGAGAGCTAGAAGTCCACACGTTATTTCATAACCAAAAAACTGACTGGGCCTGTCTGATCTGTGCTAAAAGTTTCTCGACAAAGAGGTACTTAACACGTCACATACTCAGACACAGCGCCGAGAAGAACCTACCTTGTGAAACTTGTGGTCTCAAATTCAAGTCCTCGTACTCGCTCAGAGCCCACAAAAGATTACACACGGGGGAAGGTGTTTTCACGTGTGACCAATGTGCTAAGACTTACGCTCACAAAAGTCTTCTGATAAAACACTTGCAATATCACACCCACGAATATTcttgtttttgtattatttgcgGCAAAGGCTTCTATTGCAAAAGTCAACTCTTGAACCATAAAAACGCGCACACAGGTGAGCGGTGCTTTATCTGCGACGTTTGTGGCAGAAGCTATTTTTCCAGGAGCAGTTTGTTGACTcacaaaaaaatacacacagaaCGTCATGTGAAGAAAACATTCAAATGTGAAGTCTGCGGTAAATTAGTTACGTCAAGGAACTCGTTGAAACTTCATTTACAACGCCACAAAGGTGAACGAAACTTTCTTTGTGATTTGTGCGGTAAGAAGTTCAGTGAAAATATAACCATGTTGGTCCATCGGCGCGTTCACACAGGGGAAAAGCCAGAAGTGTGCAGCATTTGCGGCAAAGCTTTTGCCAAGACGTCGACTCTGCATGTTCACATGCGCACACATACAGGAGAGAAACTGTACAGCTGTAACGATTGTGGCAAGAAGTTTACGCAGAACAGCACGCTCACCATACATAGACGCTACCATACGGGGGAGAGACCGTACCACTGTGGTGTCTGCGAGAAAGATTTTGTTTCTAGATCAATTCTTAACATGCATCAGAAAGTTCACTCCAAGTCTTAA
- Protein Sequence
- MHTGEKPEVCNLCGKMFARLTTLRIHMRTHTGEKLYGCKDCGKKFTQSSTLTIHRRYHTGERPYQCGVCDKDFCNSHGTKRNLPCKTCGRRFRTLSDLRNHERLHTGEGVFTCDKMTTLHVHMCTHTGEKLYSCNDCGKRFTQSSTLNIHKRYHTGERPYHCERHSAEKNLPCETCGRKFRTTYALRSHIKLHTGDGVFTCDKCEKTFRHKGERNYLCHLCGKKFHEKQTLLLHGRVHTGEKPEICSLCGKEFARMTTLRVHMRTHTGEKLYGCKDCGKRFTQSSTLTIHRRYHTGERPYHCGVCEKKFVSKFHEKVTMVLHRRAHTGEKPEVCSVCGKVFARMTTLRVHMRTHTGDKLYSCEDCGKKFTQRGSLNPPPVIQGQVDNSYEDQKKGNKSITIRNVQTNNKQDVNKKFNCKDCDKVFENKGELEVHTLFHNQKTDWACLICAKSFSTKRYLTRHILRHSAEKNLPCETCGLKFKSSYSLRAHKRLHTGEGVFTCDQCAKTYAHKSLLIKHLQYHTHEYSCFCIICGKGFYCKSQLLNHKNAHTGERCFICDVCGRSYFSRSSLLTHKKIHTERHVKKTFKCEVCGKLVTSRNSLKLHLQRHKGERNFLCDLCGKKFSENITMLVHRRVHTGEKPEVCSICGKAFAKTSTLHVHMRTHTGEKLYSCNDCGKKFTQNSTLTIHRRYHTGERPYHCGVCEKDFVSRSILNMHQKVHSKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -