Tcri024598.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009479.1:110990582-110992104[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-08 3e-05 25.1 0.0 14 44 7 37 2 38 0.87
Sequence Information
- Coding Sequence
- ATGGCTGTTGATAACCTAAAAGGAGGGTTCAGTGTGAGAAAAGCAGCAGAAAAACATGATATTAATTACAGCGTGCTATATAAACATTGGAAACAAGGTGACCAGGTGAAAAACCATGGTGGACAGACTGCCTTAACTTCACTAGAGGAAAATCTTCTTGTAGATCGACTACAAATATGTGGAGAGTGGGGTTATCCCATTGATTCATTTATATTGAGGATCATAGTTAAGGCATTTTTAGATCATCAAGGAAAGACTGTTAGACAATTTAAGAACAATATGCCCGGTCGAGATTTTGTTTACGCCTTTATGCAACGCCATAAAAATGCTCTATCAATGAGAATGTGCCAAAACATAAAAAGAAGCAGAGCTGCAATAACTCCAGAAGTTATTAACGCATATTTCGACAGACTTGAAGAGGAGCTCAAAGACGTCCTGCCATCAAACATAATAAACTATGATGAGACAAATCCATGCGATGATCCCGGTAGGCGTAAAGTTATCATACGAAGAGGAAGTAAGTATCCCGAGCGGGTTATGAACTCAACAAAAGCGTCCACTTCCGTGATGTTTGCTGCTGCAGGAGATGGGACTATATCTCCTCCTTACGTTGTATACAAGGCACAACACTTATACCAGAGCTGGAGGGAAGGTGGCCCCAAAAACTCCCAATATAACAGAAGCAAagtgaaaaaaagaCCAGGCAGGACTGAGCCAACTATCCCAAAAGACAAGTTTCCTGGTCTTCTGAAGAAGTTGTGTGACGGGCTGAAGGAGGGAAATGTCATTGCTGGTTTCAAGAAATCAGGACTAGTGCCTCTCTGTGGAGATAAAGTATTGAGGATGCTGCCTCACACCGATAAATCCAAGGAAACCAATGAACAAGTATCAACGGCTAAAACAATTGATAACAGCTTCAAAGAGCTTCTCAAAAGCACGAGACACGATGACTTGCCCAAACCTcgaaataaaagaacaaaaattaatgtcattCTTGGTAAAAGCATAGGTTTAACTGATGTTAACATTGAAGACTCTACAGGCCCAGTAAACCAGGACCCTGAACATTCTTTATCTACCACCAAAGTTCCTACTAGCTCTAAAAATAAGGGAAAACGAGTTCTGCTAGATTCATCATCAGATAACCCTGACTTTTCCCTCCGAGAAAGTGATGAAGACTCAAACATTTTGTCTGAAGAGGAAGACATTTATACTGCCTCAAGTGGTCCTAATGGTACTTCTTCCTGGAGACTTTGCAGTGGTTAA
- Protein Sequence
- MAVDNLKGGFSVRKAAEKHDINYSVLYKHWKQGDQVKNHGGQTALTSLEENLLVDRLQICGEWGYPIDSFILRIIVKAFLDHQGKTVRQFKNNMPGRDFVYAFMQRHKNALSMRMCQNIKRSRAAITPEVINAYFDRLEEELKDVLPSNIINYDETNPCDDPGRRKVIIRRGSKYPERVMNSTKASTSVMFAAAGDGTISPPYVVYKAQHLYQSWREGGPKNSQYNRSKVKKRPGRTEPTIPKDKFPGLLKKLCDGLKEGNVIAGFKKSGLVPLCGDKVLRMLPHTDKSKETNEQVSTAKTIDNSFKELLKSTRHDDLPKPRNKRTKINVILGKSIGLTDVNIEDSTGPVNQDPEHSLSTTKVPTSSKNKGKRVLLDSSSDNPDFSLRESDEDSNILSEEEDIYTASSGPNGTSSWRLCSG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -