Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 3.8e-06 0.005 18.0 0.0 14 39 229 253 224 256 0.87

2 2 0.0024 3.1 9.0 0.1 1 21 267 287 267 287 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	3.8e-06	0.005	18.0	0.0	14	39	229	253	224	256	0.87
2	2	0.0024	3.1	9.0	0.1	1	21	267	287	267	287	0.95

Coding Sequence: ATGGGTGCTCTGACGTCAGATGTTACGGCCAGTCCTTCTACAGGAGTCACGCCCCCGACTGCCAGAGCAGAAGCCTGGGAATCGCTGGGACTGTTAGCCAAGCCAGGACTTGTCACCGCCGATAACACCCTTTGCCTGACATTGGGAATGAAGGCCAAGATACTAAAACTACCTCAGACCAGACACACCTACAAAGTCCACCCGGTTCCTGGTCGGAATGATGCAAGACTACCAGACTCTTACCATCAGAGGCCAAACAACGCCTtctccaaGCTCAGGGCAGAGACAAATGTGTTAAACATGGAGGGAGTAATAATCATAAGACATGCAAAGAAGAAGGTTGTGTTAAACAGATTCAGAGAGGAGGTAAGTGTGCTAAACATGGAGGGAACCAGTACTATAAGATGTGTAAAGAAGAAGGGTGCGTTAAACAGGCCAAGAGAAGAGGTAGTTGTTATAAACATGGAGGAACATATTGTCATAAGACATGCAAAGAAGAAGGATGTGTTAAACAAGCTCGAGGAGGAGATAAATGTGTTAAACATGGAGGGACGCAGTATCATAAGACATGTAAAGAAGAAGGGTGCGTTAGACAGGCTAAGAAAGGAGGTAGCTGTGCTAAACATGGAGGGATCCAGGAGTAAATGTGTGGAGGGATACCAAAtgGACATGGATGCGCTGAGAAACAACACTAGTCTCACTAAAGCGTCTGCCACCTATCATATTCCTTCCCCCACTCTGTGGAAACGAGCTCGACGCATGGGTGTCGATATctccaaattaaatatcaagtcgTGGACTGAGGACAGTCTCAACAGCGCATTGGGGGCCCTCAGATCTGGCGCCATGTCTGCTAACAAAGATTAA
Protein Sequence: MGALTSDVTASPSTGVTPPTARAEAWESLGLLAKPGLVTADNTLCLTLGMKAKILKLPQTRHTYKVHPVPGRNDARLPDSYHQRPNNAFSKLRAETNVLNMEGVIIIRHAKKKVVLNRFREEVSVLNMEGTSTIRCVKKKGALNRPREEVVVINMEEHIVIRHAKKKDVLNKLEEEINVLNMEGRSIIRHVKKKGALDRLRKEVAVLNMEGSRSKCVEGYQMDMDALRNNTSLTKASATYHIPSPTLWKRARRMGVDISKLNIKSWTEDSLNSALGALRSGAMSANKD*

Sequence clustering based on sequence similarity using MMseqs2