Tbar037072.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010004204.1:1-14917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 5.7 9.8 4.7 3 23 14 34 13 36 0.96 2 11 0.023 5.3 9.9 1.9 2 20 39 57 38 58 0.91 3 11 0.091 20 8.0 0.5 3 23 65 84 63 84 0.95 4 11 0.15 34 7.3 0.8 1 17 89 105 89 106 0.89 5 11 0.00092 0.21 14.3 5.1 2 23 136 157 135 157 0.95 6 11 5.1e-05 0.011 18.3 1.9 1 23 162 184 162 184 0.97 7 11 7.7e-06 0.0017 20.8 0.7 1 23 189 211 189 211 0.97 8 11 6.4e-06 0.0014 21.1 0.3 1 23 217 239 217 239 0.97 9 11 0.0001 0.023 17.3 0.8 2 23 248 269 247 269 0.95 10 11 8.3e-06 0.0019 20.7 7.0 1 23 275 298 275 298 0.97 11 11 4.4 9.8e+02 2.7 0.2 1 8 303 310 303 319 0.80
Sequence Information
- Coding Sequence
- ATGCAGGGCAAGCTGCTGGAAGCCATTGGTCAGGCTTGCTGCCCTCTGTGTAAGATCACCTTCTCTGAGCTGGAGGCATACAGGCGACATGTCCACATGCACACCCACCCATTGAAATGTGAGGAGTGCGGCCAGCGCTTCAAATTCAACAAGGGTCGCAGGCTTCATATTTGCCCTGGAGAACCTTGGGCATGCGACATGTGTTCTGAGTCGTGCACACTTGTCAACCTCACCCTCCACCAGGCAAACCACGGCATTCCACCTCATCACTGCTACGAGTGTGGCCGAGACTACTACCGACAGGAAAACTACTTGAAGTGCTGTGTGGGCCCCCCGAGGAAGGTCAGCAGGATCAGGGAGACCAACAACAACAAGGATACAGATTCCACCAAATCTGAGAGCTGTGTGTGTCACGTGTGTGGAGAGCTGTTCAAGACCACATCTAGTCTCAGGCTACACATATCCCATCATAAGGAACAGCAGTACTCATGCGAGATATGTCCTAAACGCTTTTATCGTAAGGATGTCCTGCAGGAACACCACTTTGTACATCAGGAGCCCAAGTTCCCCTGCACTATATGCAACAAGATGCTCAAGTCAAGCAAGTCACTCAACACTCACATGTTGTGGCACTTGGGCAAGAAGCGTTACTCATGCTCAGAATGTGGACGGGAGTTCTTCCAAAAGGGCAATTTGTTGAACCATGCTGAAATGCACAAGGAAGGCCACAGGGCTTTGCTCGAGTGTACCTTCTGCAGCAAGAGTTTCATCAACAAGAATGGGTTTGCACGCCACCAACTGGAGCACACTCAAGCACACATCTACAAGTGCACACACTGCAGCAAGTCCTTTATCAAGAAACATATGTTGACCTCACACATGCGGTTGAGCCACAGCAACCACAGCTTTGAGTGTCCATACTGCCGTATTGTCCATTCGCCACAAGACAAGCTTCAGGAGACATCTGCAGAGTCGTCACGAAAATNN
- Protein Sequence
- MQGKLLEAIGQACCPLCKITFSELEAYRRHVHMHTHPLKCEECGQRFKFNKGRRLHICPGEPWACDMCSESCTLVNLTLHQANHGIPPHHCYECGRDYYRQENYLKCCVGPPRKVSRIRETNNNKDTDSTKSESCVCHVCGELFKTTSSLRLHISHHKEQQYSCEICPKRFYRKDVLQEHHFVHQEPKFPCTICNKMLKSSKSLNTHMLWHLGKKRYSCSECGREFFQKGNLLNHAEMHKEGHRALLECTFCSKSFINKNGFARHQLEHTQAHIYKCTHCSKSFIKKHMLTSHMRLSHSNHSFECPYCRIVHSPQDKLQETSAESSRKX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -