Basic Information

Insect: Timema bartmani
Gene Symbol: ZIPIC
Assembly: GCA_902151455.1
Location: CABFWB010003119.1:33885-62399[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3e-05 0.0075 18.8 0.4 2 23 325 348 324 349 0.93

2 9 1.2e-07 2.7e-05 26.5 1.0 1 23 354 376 354 376 0.98

3 9 0.00037 0.083 15.5 0.7 3 23 384 406 383 406 0.96

4 9 0.0006 0.13 14.9 0.9 1 23 413 437 413 437 0.98

5 9 0.0036 0.82 12.4 1.7 2 23 445 468 444 468 0.95

6 9 7.3e-05 0.016 17.8 0.4 1 23 474 498 474 498 0.95

7 9 0.0063 1.4 11.7 5.0 1 23 504 528 504 528 0.98

8 9 0.00085 0.19 14.4 1.2 1 23 534 558 534 558 0.98

9 9 8.7e-05 0.019 17.5 4.2 1 23 570 595 570 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3e-05	0.0075	18.8	0.4	2	23	325	348	324	349	0.93
2	9	1.2e-07	2.7e-05	26.5	1.0	1	23	354	376	354	376	0.98
3	9	0.00037	0.083	15.5	0.7	3	23	384	406	383	406	0.96
4	9	0.0006	0.13	14.9	0.9	1	23	413	437	413	437	0.98
5	9	0.0036	0.82	12.4	1.7	2	23	445	468	444	468	0.95
6	9	7.3e-05	0.016	17.8	0.4	1	23	474	498	474	498	0.95
7	9	0.0063	1.4	11.7	5.0	1	23	504	528	504	528	0.98
8	9	0.00085	0.19	14.4	1.2	1	23	534	558	534	558	0.98
9	9	8.7e-05	0.019	17.5	4.2	1	23	570	595	570	595	0.97

Sequence Information

Coding Sequence: ATGGAGACTGGTTGTCCACGCACCTTGATGCTAGAAAGGGTGTATAACACTAGCTTTAGGATGAAAACTCTAAGACCGCCGTCATTGGGTCTGAGTTCATACTCGTGTCATGTTCTAGATCTGAAAGGAGAATTTAGGGCCGAAGTAATGCGTGGATCCTCCAAGATGGAGCTGCCCATCTTAGTGGTTTCCTCTAATGGGAAAGGAGCTCCGACATTGTTGGGAAGAAATTGGTTACATTTGTTGAAATTGGACTGGCAGTCAGAAGTTAGGTATGTTGGGAACATGCTACAGGACCGATCAAGTCTGGTGAAAtcactcatttttaaacatgcaGTGGGGGCTATTAAGGGAATAACACTAGATGTGGTTATGAAAGAGGGAGCCTCGCCTATATTTTGTAAAGCGAGAACAGTGCCTTACGCTTTGCAGGATGCGGCGGAGGAAGAATTAAAGTTGATGCGTGATGAGGAAATAATGTACTCCGTTCAACATAGCCAACGGGACTACACCAGAGGTCGAAAAACTATGGGAGAGGCATTGAAAGAGAAGAATAATTCACCCAAGGGGATGGCTTTTATTGCAATTTCTACTGACAAATCCAAGAATACCACGGAAATTGTCATTAACACGCCACGAGGGGAGCAAGTTCTCAAAGGCAAGACGACCGACTTAATGAAGGCAACTTCTAATTTGTGGGTAAAGTTGGAGAAAATCAGTAACAAATCGAGTCAGACGCTGACCATCAGTAGCGTTGAAAGTCCAAAGGGGGAGCCAGATACTTCTCGCAAAAGGAAACTTAAAAAAGCTGCCAAGAGGGCCTCCTCCACGTCGTCACCAACGGACAATGCGGAAGGGGAAAACCACGAAGATTCTCCAGATGAACAACCGGTGTTGGAAGCCTTAGCGGAGCTTGGCATTACGCCGGACAGTCTGTTTTGGGTGATGTCAAATTCCGGACACAAACTGTGGGTCTGTCCGACCGAAGACTGCAAGAAGATGTATCCACGCCAGAGTATGCTTAAAGTGCACATACTAAGCCATCACGGCATCAGGCCTTATAGGTGCCCAAAGTGTGATAAGCGGTTCACAACTATCTACAACTTGAACGCTCACATCAAACTTCACCGGCGCCCAGCCGAGATGGCGTGCCCAGTGGATAAGTGCAAGGAGCGCTTCCAAACCAAGAGGAACATGGAGGTACACATGAAGACGCATGATGTCCAACACGCTCCATACAAGTGCATGTACCAGGACTGCGGGAAATACTACTACTCTGCCAACGCCCTCAACTCGCACTACCGCATCCACCAGCACAAGGAGGAGGAGTTGCGCTGCCAATGGGGGACCTGCAACAAACTGTTTGACCAGCCGTGTCGTCTGAAGGCCCACATGCGCTCACACACGGGCGACAAACCCTACAGTTGTCTCTTTGAGGGTTGTGGAGGGGCGTTCTCTACTGCCAGCAAATTAAAGCGCCACCAAATGAGACACTACAACTTGCGGAAATTTCGCTGCACTTTTGAAGGCTGTTCTAAAATGTTCTTGAGGTCAGAGCACCTGCGGGaacacatgcacacacatttGGGACAGAGGAGTTTCCAGTGTCCTGTCGAAAACTGTGGTGTGAGGTTCTCTGCTCGAAGTACGCTCTACGTGCACCATAAGAAGCACCTCAACAAGGGGAGTCTATCCGAAAAGGTGGATTACCACTGCCCCATCGAGCAGTGCAGCAAGTCCTACTCGAGCAAGTCTACTCTCAGACAACACATGCTCATGTGTCACACTCCCATACTGGCTTCGGACTCGAGCCAGTTGGACTATATAGCCCTATTGACTGGTGATGATGACTTGACCCTGGATGGCTTGCAGTTTGCAGATGGTACCCACACCACCTCTAATGatttcCAGTTTACCAGTGATTTGGGTGCACCCTTTGAATCAGGGGGCTCTGTCATCACTCATGTGGTGTTGGCTCCGCCAGATGAGCCGTCGAGTACATTAGCCGTGTCAGACTCTGGTGGCACCAGTCACGCGGATGTATGCACCACGACGGAGGATCCTCCTGACATTCTGGAGGGTGTGTCCTCACCATCCTCCCCGGTCAGACTTGATGTGACGCAGGGTGCGGCTCGCACCAATATAACATTCCCCGACTTCCTCCTCGAGAAGAAGCGGATCTTCAACACTGTAGAACCGACGCCGCTTATCGGTGGGGATGTCTCCATGTTGAGGGGAGACCATCAAGACATGTCTCACCATCTCCTGATGCAGgaCGACTTTGCTATCAGTCATCACGGCTTCTATCAAGATGACCACATGATGACCATTGGGGCTGGAGTTAGTGAGTTCCAAGTGTTACTATTGGACGCTGGGGGAAGCACAGAGGAGTTTGCAGAGTCGACTATAAATCTGCGGGATCTAGAGTAG
Protein Sequence: METGCPRTLMLERVYNTSFRMKTLRPPSLGLSSYSCHVLDLKGEFRAEVMRGSSKMELPILVVSSNGKGAPTLLGRNWLHLLKLDWQSEVRYVGNMLQDRSSLVKSLIFKHAVGAIKGITLDVVMKEGASPIFCKARTVPYALQDAAEEELKLMRDEEIMYSVQHSQRDYTRGRKTMGEALKEKNNSPKGMAFIAISTDKSKNTTEIVINTPRGEQVLKGKTTDLMKATSNLWVKLEKISNKSSQTLTISSVESPKGEPDTSRKRKLKKAAKRASSTSSPTDNAEGENHEDSPDEQPVLEALAELGITPDSLFWVMSNSGHKLWVCPTEDCKKMYPRQSMLKVHILSHHGIRPYRCPKCDKRFTTIYNLNAHIKLHRRPAEMACPVDKCKERFQTKRNMEVHMKTHDVQHAPYKCMYQDCGKYYYSANALNSHYRIHQHKEEELRCQWGTCNKLFDQPCRLKAHMRSHTGDKPYSCLFEGCGGAFSTASKLKRHQMRHYNLRKFRCTFEGCSKMFLRSEHLREHMHTHLGQRSFQCPVENCGVRFSARSTLYVHHKKHLNKGSLSEKVDYHCPIEQCSKSYSSKSTLRQHMLMCHTPILASDSSQLDYIALLTGDDDLTLDGLQFADGTHTTSNDFQFTSDLGAPFESGGSVITHVVLAPPDEPSSTLAVSDSGGTSHADVCTTTEDPPDILEGVSSPSSPVRLDVTQGAARTNITFPDFLLEKKRIFNTVEPTPLIGGDVSMLRGDHQDMSHHLLMQDDFAISHHGFYQDDHMMTIGAGVSEFQVLLLDAGGSTEEFAESTINLRDLE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -