Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010001723.1:26367-37510[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.27 61 6.5 0.1 3 20 454 471 453 473 0.92

2 16 0.01 2.3 11.0 3.8 1 23 479 501 479 501 0.95

3 16 4.2e-07 9.4e-05 24.8 3.5 1 23 507 529 507 529 0.98

4 16 0.00079 0.18 14.5 5.8 1 23 535 557 535 557 0.98

5 16 0.0012 0.27 13.9 0.1 1 23 562 584 562 584 0.95

6 16 3.4 7.8e+02 3.0 4.6 1 21 593 613 593 615 0.86

7 16 0.067 15 8.4 0.6 1 23 621 645 621 645 0.96

8 16 1.5e-06 0.00034 23.0 1.7 1 23 651 673 651 673 0.99

9 16 0.0059 1.3 11.8 0.7 1 23 679 701 679 701 0.98

10 16 5.5e-05 0.012 18.1 0.4 1 23 716 738 716 738 0.98

11 16 0.0053 1.2 11.9 1.1 3 23 746 766 744 766 0.97

12 16 0.00018 0.041 16.5 0.4 1 23 772 794 772 794 0.98

13 16 1.3e-05 0.003 20.1 3.2 1 23 800 822 800 822 0.98

14 16 0.0014 0.3 13.8 0.3 3 23 830 850 828 850 0.97

15 16 0.021 4.7 10.0 3.5 1 23 856 878 856 878 0.98

16 16 0.0036 0.81 12.4 2.1 1 23 891 914 891 914 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.27	61	6.5	0.1	3	20	454	471	453	473	0.92
2	16	0.01	2.3	11.0	3.8	1	23	479	501	479	501	0.95
3	16	4.2e-07	9.4e-05	24.8	3.5	1	23	507	529	507	529	0.98
4	16	0.00079	0.18	14.5	5.8	1	23	535	557	535	557	0.98
5	16	0.0012	0.27	13.9	0.1	1	23	562	584	562	584	0.95
6	16	3.4	7.8e+02	3.0	4.6	1	21	593	613	593	615	0.86
7	16	0.067	15	8.4	0.6	1	23	621	645	621	645	0.96
8	16	1.5e-06	0.00034	23.0	1.7	1	23	651	673	651	673	0.99
9	16	0.0059	1.3	11.8	0.7	1	23	679	701	679	701	0.98
10	16	5.5e-05	0.012	18.1	0.4	1	23	716	738	716	738	0.98
11	16	0.0053	1.2	11.9	1.1	3	23	746	766	744	766	0.97
12	16	0.00018	0.041	16.5	0.4	1	23	772	794	772	794	0.98
13	16	1.3e-05	0.003	20.1	3.2	1	23	800	822	800	822	0.98
14	16	0.0014	0.3	13.8	0.3	3	23	830	850	828	850	0.97
15	16	0.021	4.7	10.0	3.5	1	23	856	878	856	878	0.98
16	16	0.0036	0.81	12.4	2.1	1	23	891	914	891	914	0.96

Sequence Information

Coding Sequence: ATGAAAAGATCCGTGCTTGACCTGCTGGTGTGTCTTGATgagTTTGATCTAACAAAGTTGGGAGTAGCGGCCAGTCAGCTCTGTAGAGTTTGCGGTCGGTTAAGTCAGCGGCTTACCTCTATCTTTGGTAAGAAAGGCACAACCATGGAGTTAGCTTACAAGATTCATACTCATCTTCCTATTTTGGTGACCAAGGATGACTTGATGCCATTGAGCCTCTGCGAGCCCTGCATACATAAGCTAGATCTGTGCCATGACCTTGTAAATACATGTCTTGACGGTGACACCAAGATTCGACAGATATTGGGACTGCCGATAGAAAGAGAAGATTTTCTCCAAGAAGAGGAGTTGATTACAATAAAAGAGGAAGATTCTTCTGAAACTCAGCTGAATataaaaaacaaaccatGTAAAATTGTTGTGATAAAAACAAAGTCCAAAGAACCACTGTCTAATGAAGAAATCATGAATGTACTTCGAACAAAAGGAGAAAAACATAAGTTGTTTGTACCGGGAAAGAAATACAGCACCAATATTTTGAAAGGCTTTAATGAAACATCAGGGGAGCAATCAAGTGAGCTCCAAGAATCTGAGGTGTTGATGGAATCTCTTGAAACCGATGTGACATTGACTGACGAGCAGGAGATTCATTCCGACTTAGAGGTATCATCAGAACAGACGCCAGTCACTTTGAAAAAACTTGATGAACCTTTTTCCGAAACCTCTCTAGAACAATTGCCGACTACAGAGGTCCATGATGGATGCACTTGGGAAAATATGATCGCCCCTAGCCGCAAGAAAAGCATCACTTACTTCTGTTTCTACTGCGAAGAGACAATGATCGGAACCGAAACTCTCCTTTCTCACCATTCCTTAAATCATCCAGACAAAGTGTTTATATGTACCAAGTGCTCACCTCCCCTTGTCTTCTACGAGTCCAAACATTTGTTTGATAAGCACATGCTCCATCATTCGCAGGATTGGAAGGATAATACGGACATTACATCACCATTTTATGAACCAGCATTAAATGAAGTTGATTCTGTAATCACCCTCCCACTTACTGGTTCTGCTGATAACATGATCCAGGTTGAAGCCTTTGATAATGAAGAAGATTGTTCTTTCATAATTGAGAGTGCTTTACTTGAACCTGAGGTAGATATAAACGACATCAAACCCAGAGTAGATATAGCCGACGCCATTATCCAAGTGAACAAGCAATTTCAGAAGAAAAGTGGAAATGACATAACCTTGAATGGGGAAGATAATCAAGAAGGGAACACTTCATCGAAGCAGCATAATCTTACTGTGATTTCTGTGAAGAAGAAACGAAAGCCACGTTCTAAGTACGGCCCTTACTGCAGGTATTGCGATCTTATGTTTGATTCCATGGAAGAGTTGGCTATGCACAAGAGTCAGGACTCTTGCAAGACCCACGTTTGCCAATATTGTGGGCGACAGTTCCACACCAAGAACAAACTCCTGGAGCATGAGCTTCTCCACTCAAAAGAGCGGCTCTTCATGTGCGAAAAGTGTGGCAAGAGTTTCCGTAGCTCCCACCAACTGCGAAATCATCAGATGATACACACATCCAACAAGAAGTACTTCTGCACCCATTGTAGTAAATCCTACAACACCTACGCTAGTTACCGGTACCACATGAACACCCACACCAACGAGGTGTACCTCTGCGACATTTGTGGGAAAGGGTTGAAGAACTTGGGCAGTCTGCGTGTACACAGTCTCAGGCACACTGACCCGGAGAATTTCAAACGCTTTTCTTGTGAATTTTGTGGGCACAAGTTTTTCAGCAGGGCTCGGATGCTGGAGCATGTACGATGCCACTCCAAGGAACGGCCATTCAAATGCACTGTGGAAGGTTGCCTCAAGGCATTCCAGCTAATGTGGCATCTCAAGCGGCACGCGTTGGTTCATTCTGATCTTCGTAAGTATACCTGCAAGGTGTGTGGGAGTAGCTTCAAACAGCGCAAGAACTTGAACGTCCATGTCAAGACCCACGAGGGTAGTCACAAGTACAAGTGCAGTGTGTGTCAGAGTCCATTCGAATACTTGAAGGACCTCATCTCACATCGCTCCTCGCATTCACAGGAAGAGATCAGGGCCAACAAGTTCAAGAAGAGCCAGTTTGAATGTCCTGAATGCAGTAGAATGCTCTCGAGTAAAGTGTCCTTGGCACATCACATGCTCATCCATACCGGCGAGAAGCCTTTTGGTTGTAACTTCTGCAACAAGTCTTTCAAGAGCAAAGTAGCCAGGGACGTTCATCTGCGCCTACACACGGGCGAAAAACCCTATAACTGCAGCTACTGTGAGGCCTCCTTCACTCTGAAGTCATACCTGGTGGTTCATGAACGCATCCACACAGGCGAGGCACCATTCAAATGTGACAAGTGCGACAAAGCATTCCGCTCAAATGTCAACCTCCACCAACATTCCAAGGTACATTCTGATCACCGTCCATACGGCTGCGCAGTCTGTTCGAGGGCTTTTCGCCGTCGAGAAGCCCTTTACACGCATTTCCGAATACATACAGATGAGCGTCCGTTTGTTTGCAGGGTTTGTAGTCGTGGTTTCAAGCAAAAGGGCGATTGTAATAAACATGAGAAAactcattacaaatattcaccTAATGTAACACTTTCTCCGGTGTTTTCATGTCCTTTctgtaaaaaacactttaactCCCCTACCAGTGTTGAAGAGCATTTCTCTACAGTTCATGGTATAATTTCTAGTCATTCTGAAGAGAACACAATGATTATGGTCAATGCTGATGATCTTTCAAACGTGTCAGAGGTGGAGATTGCTATTGATGGAATACCAGAATTTATAATAGGTAATTAA
Protein Sequence: MKRSVLDLLVCLDEFDLTKLGVAASQLCRVCGRLSQRLTSIFGKKGTTMELAYKIHTHLPILVTKDDLMPLSLCEPCIHKLDLCHDLVNTCLDGDTKIRQILGLPIEREDFLQEEELITIKEEDSSETQLNIKNKPCKIVVIKTKSKEPLSNEEIMNVLRTKGEKHKLFVPGKKYSTNILKGFNETSGEQSSELQESEVLMESLETDVTLTDEQEIHSDLEVSSEQTPVTLKKLDEPFSETSLEQLPTTEVHDGCTWENMIAPSRKKSITYFCFYCEETMIGTETLLSHHSLNHPDKVFICTKCSPPLVFYESKHLFDKHMLHHSQDWKDNTDITSPFYEPALNEVDSVITLPLTGSADNMIQVEAFDNEEDCSFIIESALLEPEVDINDIKPRVDIADAIIQVNKQFQKKSGNDITLNGEDNQEGNTSSKQHNLTVISVKKKRKPRSKYGPYCRYCDLMFDSMEELAMHKSQDSCKTHVCQYCGRQFHTKNKLLEHELLHSKERLFMCEKCGKSFRSSHQLRNHQMIHTSNKKYFCTHCSKSYNTYASYRYHMNTHTNEVYLCDICGKGLKNLGSLRVHSLRHTDPENFKRFSCEFCGHKFFSRARMLEHVRCHSKERPFKCTVEGCLKAFQLMWHLKRHALVHSDLRKYTCKVCGSSFKQRKNLNVHVKTHEGSHKYKCSVCQSPFEYLKDLISHRSSHSQEEIRANKFKKSQFECPECSRMLSSKVSLAHHMLIHTGEKPFGCNFCNKSFKSKVARDVHLRLHTGEKPYNCSYCEASFTLKSYLVVHERIHTGEAPFKCDKCDKAFRSNVNLHQHSKVHSDHRPYGCAVCSRAFRRREALYTHFRIHTDERPFVCRVCSRGFKQKGDCNKHEKTHYKYSPNVTLSPVFSCPFCKKHFNSPTSVEEHFSTVHGIISSHSEENTMIMVNADDLSNVSEVEIAIDGIPEFIIGN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447831;
90% Identity: iTF_01448843;
80% Identity: -