Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000189.1:135984-151991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.4e-06 0.00099 21.6 0.6 3 23 198 218 196 218 0.96

2 7 2e-05 0.0045 19.5 6.7 1 23 224 246 224 246 0.98

3 7 1.2e-07 2.6e-05 26.5 1.0 1 23 252 274 252 274 0.98

4 7 1.5e-05 0.0034 19.9 3.1 1 23 280 302 280 302 0.99

5 7 5.3e-07 0.00012 24.5 2.3 1 23 308 330 308 330 0.98

6 7 6.6e-08 1.5e-05 27.3 1.6 1 23 336 358 336 358 0.97

7 7 1.7e-05 0.0039 19.7 1.3 1 21 364 384 364 385 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.4e-06	0.00099	21.6	0.6	3	23	198	218	196	218	0.96
2	7	2e-05	0.0045	19.5	6.7	1	23	224	246	224	246	0.98
3	7	1.2e-07	2.6e-05	26.5	1.0	1	23	252	274	252	274	0.98
4	7	1.5e-05	0.0034	19.9	3.1	1	23	280	302	280	302	0.99
5	7	5.3e-07	0.00012	24.5	2.3	1	23	308	330	308	330	0.98
6	7	6.6e-08	1.5e-05	27.3	1.6	1	23	336	358	336	358	0.97
7	7	1.7e-05	0.0039	19.7	1.3	1	21	364	384	364	385	0.94

Sequence Information

Coding Sequence: ATGTTGTTCAAGCATGCAAGCTATTTCGCCACATTAATTGTGCCATTTTCGGATGAGGAATTGGTGAAAGTGGACTTAGAAGCAGTTCTCAAAGATGTTTTGCCCGGtgaagAACAGCCCGTCCAAGTGCCATATTGCGGGACCCTCTCCTTACCTCACCCAGGCGCTCTACTCCCAATGACCACCACAAGCACATACACCAGCTGGACTGCTCGAGGCCACAGTCCGGCGTTTGTGGTGGTGGGGGGGTCAGCGGGCCCATTGTACCATTGCAGTGTTCAGGTTCAACCAGAGGGCTCCGTTTACATGTCTGGTCTACACGAGATAAAACTATATCCACCACATAGACCAATGGATGTTAAGCTACAATATCTCAAGGAAGAGAGTCTGGATGTTGGAACTATTGAGTCTGTTAACAAGAACTCGGAAAAGTTCCTTCAGGTTGATATCGATGGTTGCAGTGACACCTCTTCTCGGGTGTCATGCCTAATAGACGAGAACTCGGGTCACTCTTTTCATGAAGATAGGCTTGATAACCTTGTCAACTCCCAGATTGGCTCCAAGAACGGCCTCCCCAAGGGCACTTGGTTCTGCAAAGTGTGCTTCAAGACTTTCTCGCAGCAGGCCAACTTGGCAACGCACGAGCGCATCCACAGAGGTGAGCGTCCATTCTGCTGCACCATATGCTTGAAGACTTTCACACAACAGTGCAACCTGTGGAAGCACGTCCGCACACACACAGGGGAGCGACCATTTGTATGTAAAGTTTGCCACCGGGCGTTTTCCCAGCAAGCCAACTTGGCAAAGCATATGAGCATCCACACAGGTGAACGTCCCTACCAGTGTCATTTTTGCCCCAAGGCGTTCACTCAACGCGTGAACCAGGTGAAACATGAACGTACGCATACTGGGGAGCGTCCTTACTCTTGCAGGTTTTGTGGTAAAAGGTTCACGCAGCAGAGCAACATGGAGAAACACGAGCGCGTGCACACAGGGGACAAACCTTACGACTGTAAAACTTGCTCACGCAGCTTCACCCAGCAAAGTAACCTAACCAAACACATGGCTGTTCACTACAAGAACAAGCCTTTTAGGTGTCAGAACTGCGTCAAGTCCTACACGCAGAAGAGTAACCTTATCAAACATGCCAAGAAGTGTCCTTGTGTTGAAGTCACTTGA
Protein Sequence: MLFKHASYFATLIVPFSDEELVKVDLEAVLKDVLPGEEQPVQVPYCGTLSLPHPGALLPMTTTSTYTSWTARGHSPAFVVVGGSAGPLYHCSVQVQPEGSVYMSGLHEIKLYPPHRPMDVKLQYLKEESLDVGTIESVNKNSEKFLQVDIDGCSDTSSRVSCLIDENSGHSFHEDRLDNLVNSQIGSKNGLPKGTWFCKVCFKTFSQQANLATHERIHRGERPFCCTICLKTFTQQCNLWKHVRTHTGERPFVCKVCHRAFSQQANLAKHMSIHTGERPYQCHFCPKAFTQRVNQVKHERTHTGERPYSCRFCGKRFTQQSNMEKHERVHTGDKPYDCKTCSRSFTQQSNLTKHMAVHYKNKPFRCQNCVKSYTQKSNLIKHAKKCPCVEVT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447828;
90% Identity: iTF_01447828;
80% Identity: -