Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000787.1:162434-164146[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00016 0.035 16.7 4.2 1 23 43 65 43 65 0.96

2 8 1.4e-05 0.0032 20.0 0.5 1 23 71 93 71 93 0.97

3 8 7.1e-05 0.016 17.8 0.8 1 23 99 121 99 121 0.92

4 8 1e-06 0.00024 23.6 0.3 1 23 127 149 127 149 0.96

5 8 0.00011 0.024 17.2 0.3 1 23 155 177 155 177 0.93

6 8 5.7e-08 1.3e-05 27.5 0.9 2 23 184 205 184 205 0.97

7 8 1.4e-05 0.0032 20.0 0.3 1 23 211 233 211 233 0.98

8 8 1.7e-06 0.00038 22.9 0.6 1 23 239 261 239 261 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00016	0.035	16.7	4.2	1	23	43	65	43	65	0.96
2	8	1.4e-05	0.0032	20.0	0.5	1	23	71	93	71	93	0.97
3	8	7.1e-05	0.016	17.8	0.8	1	23	99	121	99	121	0.92
4	8	1e-06	0.00024	23.6	0.3	1	23	127	149	127	149	0.96
5	8	0.00011	0.024	17.2	0.3	1	23	155	177	155	177	0.93
6	8	5.7e-08	1.3e-05	27.5	0.9	2	23	184	205	184	205	0.97
7	8	1.4e-05	0.0032	20.0	0.3	1	23	211	233	211	233	0.98
8	8	1.7e-06	0.00038	22.9	0.6	1	23	239	261	239	261	0.97

Sequence Information

Coding Sequence: ATGGATCCTGAGCATGCAGGGAATTCCAAACATCTCACTCGACGAAGCCACTGGAATTTTGTGAGTCCAAAGTCTAGTGGGCCATCCTCAAGCACGAGTGACCCAGTGCCTGTCCAAGACAAACGTCACACCTGCCACATCTGTCTAAAAAGTTACGCAAGTCGCCACAGCCTCACCGAACATATGGCCTGGCACAGTGGTATAAAGACCTTTTTCTGTCCTGTGTGTGAGAAGGGCTATTACAGTGCGACTCAGCTCAGAACTCATGCCAGGACTCACTCCTCCATCAGACCCTATCTCTGTAACATATGTGGCAAGTCTTACAAGCTGGATTCAGACCTCAAGAGACACTCTTTCATCCACTCTGAACTATCGCCATACCTGTGCAACATTTGCGGCAAGACCACCAATAGTAAGAGCGAACTGAATGTCCACATTCAATTGCATTCTAATGAGAAAAAGTATCTCTGTTCAGACTGTGGTCGAGCCTTTAAGCTGAGGAGTGTGTTGAAGAAACACTCTGCAGTCCACAGCCCAGAAAAACCTGAGGTCTGTAAGGTCTGTGATATGTCATTCAAGAGAAAGGAGTATTTAGAAAGGCACATGCGCATCCACACAGGTGAAAACCCTTATATCTGCAAGTTCTGTGGCCGAGCGTTCTCGGGCAAGTGGAACATGATACAGCACGTCCGACTTCATACTGGTGTCAAACcgtatgtatgtaatgtgtgCGGCGAAGCATTCACACACAATGTGACTCTAAGGAAACATGCTGAGAAGCACAAAGTTCAATTGGACACGCAACACTTAATGCCACCACCTCTGTATGAAATGGCTAATTCACTACAATGa
Protein Sequence: MDPEHAGNSKHLTRRSHWNFVSPKSSGPSSSTSDPVPVQDKRHTCHICLKSYASRHSLTEHMAWHSGIKTFFCPVCEKGYYSATQLRTHARTHSSIRPYLCNICGKSYKLDSDLKRHSFIHSELSPYLCNICGKTTNSKSELNVHIQLHSNEKKYLCSDCGRAFKLRSVLKKHSAVHSPEKPEVCKVCDMSFKRKEYLERHMRIHTGENPYICKFCGRAFSGKWNMIQHVRLHTGVKPYVCNVCGEAFTHNVTLRKHAEKHKVQLDTQHLMPPPLYEMANSLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446876;
90% Identity: iTF_01447813; iTF_01446876;
80% Identity: -