Tbar021064.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema bartmani
Gene Symbol
-
Assembly
GCA_902151455.1
Location
CABFWB010001528.1:98241-109685[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.7 1.5e+03 2.1 0.4 1 23 238 260 238 260 0.87
2 16 2.5 5.7e+02 3.5 3.2 1 21 283 303 283 305 0.78
3 16 0.011 2.5 10.9 0.7 2 23 312 334 312 334 0.95
4 16 0.0068 1.5 11.6 1.5 2 20 340 358 339 360 0.93
5 16 6.3e-05 0.014 18.0 1.1 1 23 388 411 388 411 0.98
6 16 1.7 3.7e+02 4.1 0.0 2 21 421 440 420 441 0.90
7 16 0.0045 1 12.1 0.4 1 23 483 505 483 505 0.98
8 16 0.022 4.8 10.0 0.8 1 23 511 533 511 533 0.95
9 16 0.024 5.4 9.8 1.2 1 23 552 575 552 575 0.94
10 16 0.0038 0.85 12.4 0.1 1 23 592 615 592 615 0.96
11 16 4.8e-05 0.011 18.3 0.3 1 23 620 642 620 642 0.98
12 16 1.4e-06 0.0003 23.2 1.1 1 23 648 670 648 670 0.99
13 16 0.00017 0.038 16.6 1.1 1 23 676 699 676 699 0.97
14 16 0.008 1.8 11.3 0.7 1 23 705 727 705 727 0.97
15 16 1.3e-07 3e-05 26.4 1.7 1 23 733 755 733 755 0.98
16 16 3.8e-06 0.00085 21.8 0.8 1 23 761 784 761 784 0.98

Sequence Information

Coding Sequence
ATGGTCGGTAAAATTGACATTGCTGCATCAGAGAATGAACGTTCATCTGAGGACAATGATATGGATTTGGAAAATTTAGAAAGTATTGATATGAGGTATCATGAATCACTGTGCAGATTGTGTGCTTGTCACGTTGGAAATCCTGTTTACATCTTTGGGAAGGCTGGAAAGAATTTGAAGTTGGCTAACATGATCAATTGTAGTCTTCCCATCAGTgttaATATCACAGACACCTTACCTAAGCAATTATGTTCATCCTGCATCGACAAACTAATAACTTGTCATAAGTTTGCAGAGTCTTGCATAGAAGCAGAGGAACGTCTAACGGTATTATCTAAATGGTCTTCAAACAAGTTGATTGAGCCCCGAAGGATTGAGTACCCTTCAGACCATCATAACTGCCCTTTATGTATAAATGGCACTATAAAGGTTTTGGATAAGGCACCAAAAGAATTAGAAGATGCTGAAGAAATGGAATGCATGGTCGACATTGCGAATTATCATTGGCGCAATCATGAGAACAAAACAGACTCTGAGGAGGAGATGGAGGATGAAAATTATTCGGATGATGATCAGAAAGGGAGCAAGTCTaaagataccaattttgaagaAAGCAAAGACACGATCTACATCTGCCGGGTGTGTGGCGAGTTATGCTCTACtgttagttttagttttgagCATTCACTGACGCACGCTGTGTCCGGTAACTATCCTTGCATCCTTTGCGATACAAACTTGATCGACAGAAGGGGActtgaaaaacattttgtacACCATCGGAGCGAACAAACAACCAATGTTAGAGAATTCTCAAGAAGGGGGGAGTGGCAGAGAGACAGGACCTACAGGTGCAAGATTTGTGAAAAACTGTTTTACAAAAGGGAGAGATATCTTTTCCACCAACAGTTTCATGATGGCGCCAGGGAGAATTACTGTGATATTTGTCACAAGGAGTACGGTAGTGAGTTGTTGCTGTTCCGTCATGTCAGACAGATCCATGCCAACTTAGCGTTAAGTTGCCAAAATTGCGGAGAAGATTTTGACTCTCAATACACACTGGAAAATCATCATTGTGATGAGAATAATGGGGTGTATAAGTGTGAACAGCTTCCAAAGATGGACACAAAGGAACCTGGCCACAAATCCCCTCAAGAGATGTATGTGTGTAATTTCTGTGAAACAAGCTTCGCTACCCAGAGGAAACTAAGTGGCCACATGAGGTCTCAGCATGGGCAGGTGGGATCCCAGCGGTGTATTCGCTGCAACACTTGCCAGGCCATATTCCCCGATATCAGCCAAACCATTATGCACACCAAGGTCTGTTGTTGCCTCGCTCCGCACTTCGCACTCACCATGGACGACAACGTAGCTCTATGTCAAGCACACTTCTCTGGTTCCGAAGGAGGCAGTACAAGAGTGGAAGAGGTGTGTGCCACCAAACTGTTTGTCTGTGAATACTGTGAGACTTTCTTCGCCTCTGCAGAGATCCTCAATACTCATCGCAAGAGTCATACTAGCTCAAAGCCCTTCTTGTGTCAGTCGTGCCCAGAGACGTTCTCTAACTTCACACAGGCAGATGTCCACAGGCGTACACATTCCAACCCAAACCATCTTCATAACAGCAGCCATATGTTCACCATCTCTGTTGTGTTTCTATGTGAGGTGTGCAGCCGAGGTTTCAAGCTCTGGGAGAGTTTCCACATCCACCGTTTGAGGGATCACGAGAAGCTACAGGAGTGTGGTCTTTGGTTGCAAGGGTCTGATGGGATCTATGAATGCGAACTCTGTCCCGACACTTTCGAGCAGAAGAAGCAGCTTCTTGGGCACATAAAGCTGGAACATCTCAAGAAGAAGTTTGAGTGCGATGAATGTGGCAAGgTGTTATCTCATATTTCTGGTTTGATCATCCACCGGCGACAGCACACAGGCGAGAAGCCGTATACGTGTGACGTGTGTGGGAAGTCATTTAGACAAAGTGCGGGTATGTACACCCACCGGCGCACGCACACCAAGGAGCACCCCTATTGCTGTGAGATCTGCGGGCAGGGCTTTAATGTGAAAGGAGACCTAGATAACCACCGACGCTCCAAACACACTAAAGAGCGCCCTTTCAAGTGCCCTGTCTGTCAAAAGGCGTTCCTCACCTCTGGTGTTTTCTACCAGCACAGGATGATGCACGCCGGCATCAAGAAGTACCATTGTCAATACTGCGGACGTGCCTTCTCACGATGGAACGCCCTTCGTTTACACATCCGCACGCACACAGGTGAGAAGCCTTACATGTGTGAGGTGTGCAATCGAGCGTTTGCTCAGAAGGGGGACATGAGAAAACATCGCCGCACTCAACACCCACCAGTTCAATAG
Protein Sequence
MVGKIDIAASENERSSEDNDMDLENLESIDMRYHESLCRLCACHVGNPVYIFGKAGKNLKLANMINCSLPISVNITDTLPKQLCSSCIDKLITCHKFAESCIEAEERLTVLSKWSSNKLIEPRRIEYPSDHHNCPLCINGTIKVLDKAPKELEDAEEMECMVDIANYHWRNHENKTDSEEEMEDENYSDDDQKGSKSKDTNFEESKDTIYICRVCGELCSTVSFSFEHSLTHAVSGNYPCILCDTNLIDRRGLEKHFVHHRSEQTTNVREFSRRGEWQRDRTYRCKICEKLFYKRERYLFHQQFHDGARENYCDICHKEYGSELLLFRHVRQIHANLALSCQNCGEDFDSQYTLENHHCDENNGVYKCEQLPKMDTKEPGHKSPQEMYVCNFCETSFATQRKLSGHMRSQHGQVGSQRCIRCNTCQAIFPDISQTIMHTKVCCCLAPHFALTMDDNVALCQAHFSGSEGGSTRVEEVCATKLFVCEYCETFFASAEILNTHRKSHTSSKPFLCQSCPETFSNFTQADVHRRTHSNPNHLHNSSHMFTISVVFLCEVCSRGFKLWESFHIHRLRDHEKLQECGLWLQGSDGIYECELCPDTFEQKKQLLGHIKLEHLKKKFECDECGKVLSHISGLIIHRRQHTGEKPYTCDVCGKSFRQSAGMYTHRRTHTKEHPYCCEICGQGFNVKGDLDNHRRSKHTKERPFKCPVCQKAFLTSGVFYQHRMMHAGIKKYHCQYCGRAFSRWNALRLHIRTHTGEKPYMCEVCNRAFAQKGDMRKHRRTQHPPVQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01445890;
90% Identity
iTF_01445890;
80% Identity
-