Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000919.1:71971-73779[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0017 0.39 13.4 5.7 2 23 15 36 14 36 0.96

2 16 0.00071 0.16 14.6 0.0 1 20 96 115 96 117 0.94

3 16 0.066 15 8.5 1.8 1 23 125 147 125 147 0.98

4 16 2.7 6.1e+02 3.4 0.3 1 10 162 171 162 183 0.73

5 16 0.0016 0.36 13.5 4.9 1 23 191 213 191 213 0.95

6 16 0.00037 0.082 15.6 0.2 1 23 222 244 222 244 0.96

7 16 3.2e-05 0.0072 18.9 0.5 1 23 250 272 250 272 0.97

8 16 6.2e-05 0.014 18.0 0.4 1 23 278 301 278 301 0.96

9 16 5.4 1.2e+03 2.4 0.3 2 9 309 316 308 334 0.87

10 16 7.9e-06 0.0018 20.8 0.2 2 23 346 367 345 367 0.97

11 16 0.12 27 7.6 0.1 1 23 374 396 374 396 0.97

12 16 1.1e-05 0.0025 20.3 2.4 2 23 428 449 427 449 0.96

13 16 0.3 67 6.4 3.7 1 23 455 477 455 477 0.88

14 16 0.00058 0.13 14.9 1.1 1 23 483 505 483 505 0.96

15 16 0.0037 0.82 12.4 1.8 2 23 513 534 512 534 0.97

16 16 0.00027 0.061 16.0 1.7 1 23 540 563 540 563 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0017	0.39	13.4	5.7	2	23	15	36	14	36	0.96
2	16	0.00071	0.16	14.6	0.0	1	20	96	115	96	117	0.94
3	16	0.066	15	8.5	1.8	1	23	125	147	125	147	0.98
4	16	2.7	6.1e+02	3.4	0.3	1	10	162	171	162	183	0.73
5	16	0.0016	0.36	13.5	4.9	1	23	191	213	191	213	0.95
6	16	0.00037	0.082	15.6	0.2	1	23	222	244	222	244	0.96
7	16	3.2e-05	0.0072	18.9	0.5	1	23	250	272	250	272	0.97
8	16	6.2e-05	0.014	18.0	0.4	1	23	278	301	278	301	0.96
9	16	5.4	1.2e+03	2.4	0.3	2	9	309	316	308	334	0.87
10	16	7.9e-06	0.0018	20.8	0.2	2	23	346	367	345	367	0.97
11	16	0.12	27	7.6	0.1	1	23	374	396	374	396	0.97
12	16	1.1e-05	0.0025	20.3	2.4	2	23	428	449	427	449	0.96
13	16	0.3	67	6.4	3.7	1	23	455	477	455	477	0.88
14	16	0.00058	0.13	14.9	1.1	1	23	483	505	483	505	0.96
15	16	0.0037	0.82	12.4	1.8	2	23	513	534	512	534	0.97
16	16	0.00027	0.061	16.0	1.7	1	23	540	563	540	563	0.94

Sequence Information

Coding Sequence: ATGGAGCACCTGGATAAACTGAATGGGCGGGAGGGGGCACTCTCTTGCTGTGAATGTAAGAAAAATTTCTGCAACTATTCCTTGTTGCAAAAACATGAGGCCACCCACCTGACGATCTCGGCGAAGAAACAAACTTGGCCAAACACCAGTTCTGGGAATCAGGGTGCAGCCACATTGTTAGAAACAAATGCCACCATCTTGGTAGAAAAAGATGCTTCTATGTTTGTAGAAACAGATCTGACAAGTGGCTATAGGAAGATTATGCCCAAACCCAACCTGGGCAACTTTATGTGCCCTATATGCGGCTCAAGATTTGCGACGACAGAGGAGTTGGCTAAACACACGGCCAGGCTGGAGGACAGCAGCCAATGTTATGTCTGTTGGGAGTGCAAAATGAAGCTCTGTGACTTCTTATCACTTCTGAAACATGAGCGGATGCATCTCAACGCGGTTAAGAAACTGATTAAACCAAGCAAACATTCCTTCATGTGTCCTAACTGCGACATGCAGTTCCTCACAGGCCAGCAGCGGAAGGAGCATCTTAAGAAATTGAATGACAGTGACCTTTGTCATGCCTGTAATGAGTGTAAGAAGAAGTTCTGCAACCTCTCTTCCCTACTCCTCCACGAGTCCCGCCACCAGGATGTGTCAACATCCAACAATTACCTCTGCGAGATCTGTGGAAAAGTCATTCAAACCAGATCTGGCTACAGCCGCCACCTCCTGACACACAGTAGGGATAAGACTTTTGCATGTGATTGGTGTGACAAATCTTTTATCTACAAAAAATCCTTAGACATCCACATGTATTCTCACCCTTTACGAGTGGATTACTCCTGTTTCGACTGTTCACTAGCATTCACAGACTTTTCTGGTTTGAAGTCACACATGAAAGCCGCTCACACTGATGAGACCAGGCAGCTGTCTTGCAACACCTGTGGAAAATCTTGGGATGTTCCTGCCTTTCTCGACCATTACAAGCTTTGCCATCTGGAGTTTGAGAGCAAGATCGCAGACAAACGCCGTAAGAATGTGACTTGTCCAAAATGCTCCAAAGTCTTTTCACAGCCGGCCGCAGTAAGGCGCCATCTAAAACTCCACAATGCTGGCAAGAAACACCACACATGCGAGGTCTGTGGTGCAGTCATTGTTAAGCGGAACGAGATGATTGAACATGCAAAGTCGCACTATGGTGACACCCTACCTGAGAAATACATCAATATGATGAAGATGTTGGAAAAAAGCAGAGCACAGGCGCTGAAGTATAATAGGAAAGATTGTATATGTGAATATTGCGGGATGAAATTCAACAAGAATGCCAACCTTCAGATGCACCTACGTCGTCATACCGGGGATAAGGCACACAAATGTGAGCTGTGTGGCCGTGGCTTTCACACAAAGCAGAGGTTGAAGTTTCACGTGGAACTACATTCTGGTGAGCGCATATACTCTTGCGCCAAGTGCCCACGGGAGTTCTCCAACAAACAGGAATATGAACAGCACAACAAGCTGCACACTGTGAAAGCTAGGGACATCCAGTGCCCTCACTGTGAACAGAAGTTGAGCAAGAAACAGACATTCCTGGCTCATTTGAGACTGCACACGGGGGAACGCCCTTATGTTTGTAATCTGTGCCCCAAAAGGTTCATATCCAAGACAAGTCTCTATACCCACAACAAGCTCAAACACCCACCAGAACTAGTAGCAGACAATTGTACTCAGGAAATGTCTAGTGGGTTCATGTACAAGGACATGCAGATTGTAGTGATaccagaggaagaggggaatgAAATGAGTGGAGTTTTGTGA
Protein Sequence: MEHLDKLNGREGALSCCECKKNFCNYSLLQKHEATHLTISAKKQTWPNTSSGNQGAATLLETNATILVEKDASMFVETDLTSGYRKIMPKPNLGNFMCPICGSRFATTEELAKHTARLEDSSQCYVCWECKMKLCDFLSLLKHERMHLNAVKKLIKPSKHSFMCPNCDMQFLTGQQRKEHLKKLNDSDLCHACNECKKKFCNLSSLLLHESRHQDVSTSNNYLCEICGKVIQTRSGYSRHLLTHSRDKTFACDWCDKSFIYKKSLDIHMYSHPLRVDYSCFDCSLAFTDFSGLKSHMKAAHTDETRQLSCNTCGKSWDVPAFLDHYKLCHLEFESKIADKRRKNVTCPKCSKVFSQPAAVRRHLKLHNAGKKHHTCEVCGAVIVKRNEMIEHAKSHYGDTLPEKYINMMKMLEKSRAQALKYNRKDCICEYCGMKFNKNANLQMHLRRHTGDKAHKCELCGRGFHTKQRLKFHVELHSGERIYSCAKCPREFSNKQEYEQHNKLHTVKARDIQCPHCEQKLSKKQTFLAHLRLHTGERPYVCNLCPKRFISKTSLYTHNKLKHPPELVADNCTQEMSSGFMYKDMQIVVIPEEEGNEMSGVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01449895;
90% Identity: iTF_01445891;
80% Identity: -