Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010046652.1:1-1257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1e-06 0.00023 23.6 1.2 2 23 46 67 46 67 0.98

2 10 0.017 3.8 10.3 0.9 1 19 71 89 71 92 0.80

3 10 2e-07 4.5e-05 25.8 6.0 1 23 99 121 99 121 0.98

4 10 5.7e-06 0.0013 21.2 1.2 1 23 127 149 127 149 0.94

5 10 4.8e-06 0.0011 21.5 2.2 1 23 155 177 155 177 0.97

6 10 0.0001 0.023 17.3 3.4 1 23 183 205 183 205 0.97

7 10 0.00096 0.22 14.2 1.3 2 23 212 233 211 233 0.95

8 10 9.6e-06 0.0022 20.5 7.2 1 23 239 261 239 261 0.99

9 10 4.5e-06 0.001 21.6 1.0 1 23 267 289 267 289 0.98

10 10 1.1e-05 0.0025 20.3 0.3 1 23 295 317 295 317 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1e-06	0.00023	23.6	1.2	2	23	46	67	46	67	0.98
2	10	0.017	3.8	10.3	0.9	1	19	71	89	71	92	0.80
3	10	2e-07	4.5e-05	25.8	6.0	1	23	99	121	99	121	0.98
4	10	5.7e-06	0.0013	21.2	1.2	1	23	127	149	127	149	0.94
5	10	4.8e-06	0.0011	21.5	2.2	1	23	155	177	155	177	0.97
6	10	0.0001	0.023	17.3	3.4	1	23	183	205	183	205	0.97
7	10	0.00096	0.22	14.2	1.3	2	23	212	233	211	233	0.95
8	10	9.6e-06	0.0022	20.5	7.2	1	23	239	261	239	261	0.99
9	10	4.5e-06	0.001	21.6	1.0	1	23	267	289	267	289	0.98
10	10	1.1e-05	0.0025	20.3	0.3	1	23	295	317	295	317	0.95

Sequence Information

Coding Sequence: gaCGAGTCGGAAAGTAGTCCTCCACACTCTCCGCTGTTTGATGGTGGTGCAAGTACGGTCGACGGTAATCACACCGTCTTGTCCGGCGATGAATCGATAGCGAATATTATGGAGCCCAAGATAGAAATCTTAGAAAAATGTGAAGATTGCGgtaagttatttaaaaccaaaGAGAATCTTACCACGCACCGACTCGTTCACAATAAACAATACAACTGCAACGAGTGCGGGAAATCGTTTCTCTTCACGAACTCTCTGGCCGATCACGCGTGCACTCGCAATAAGACAGAACGCCACAAATGCGAAGAGTGTGGTAAGTGCTTCAGCAAAAGTTccaatcttaatcaacaccgCCTCACCCATAACGGGCCGAACGAATTCGTGTGTAAGGAATGCGGGAAgggttttaaaatgaagagctATCTGATCAAACATAACTTTATCCACGAGGGACAGAAACCCCACAAATGTACGGAATGCGACAAACGGTTCGCCTCCAGGGACAGGTTGGAGAGACATCGCATCATCCACAGCGGGCGGAAACCTTATATATGCGACGTATGCGGCAGGTGCTTCAATCAGGTGTGTAACCTGAACTACCATTACCTCATTCACACTAGAGAGCATGAAGGCAAGTGTGAAGATTGCGGCCAATGTTTCAACGACGGCCTCAGTCTCAACCAACACCGCCTGTTCCATTGTTCCGAGAAACCGTACCGTTGTGAATATTGCGGCAAGTGTTTCAAGTCGAACAGCTCCATATGTCAGCATCGACTCACGCACAGCGAAAACAAGAAGTATATGTGCGAAGAGTGTGGCAAGTGTTTCAAGATTCTGGCCGCTCTGAATCAACATCGGCTGACCCACCGGGGTTACAGACCACACGCTTGCGAAGAATGCGGCAAGGGTTTTGCTCTGAGAAGCCAATTGAGCAGGCATTGGCTCGTTCATGCTAAGCACAAAACATAA
Protein Sequence: DESESSPPHSPLFDGGASTVDGNHTVLSGDESIANIMEPKIEILEKCEDCGKLFKTKENLTTHRLVHNKQYNCNECGKSFLFTNSLADHACTRNKTERHKCEECGKCFSKSSNLNQHRLTHNGPNEFVCKECGKGFKMKSYLIKHNFIHEGQKPHKCTECDKRFASRDRLERHRIIHSGRKPYICDVCGRCFNQVCNLNYHYLIHTREHEGKCEDCGQCFNDGLSLNQHRLFHCSEKPYRCEYCGKCFKSNSSICQHRLTHSENKKYMCEECGKCFKILAALNQHRLTHRGYRPHACEECGKGFALRSQLSRHWLVHAKHKT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450831;
90% Identity: iTF_01450831;
80% Identity: -