Tbar005152.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:222840-224003[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.5e-06 0.001 21.6 0.4 1 20 82 101 82 105 0.90 2 11 0.00023 0.051 16.2 1.3 2 22 109 129 108 129 0.95 3 11 0.00022 0.05 16.2 1.8 1 23 136 158 136 158 0.97 4 11 7.5 1.7e+03 2.0 1.6 1 23 164 186 164 186 0.90 5 11 0.00017 0.038 16.6 0.8 1 23 192 215 192 215 0.95 6 11 0.00018 0.041 16.5 4.3 1 23 220 242 220 242 0.97 7 11 1.7e-06 0.00038 22.9 2.9 1 20 252 271 252 274 0.97 8 11 4.2e-07 9.4e-05 24.8 0.8 1 23 280 302 280 302 0.99 9 11 0.00018 0.041 16.5 0.1 2 23 309 329 309 329 0.95 10 11 1.1e-07 2.5e-05 26.6 2.2 1 23 335 357 335 357 0.98 11 11 1.2e-06 0.00026 23.4 1.0 1 23 363 385 363 385 0.99
Sequence Information
- Coding Sequence
- ATGTCTTCTCAAACACAGTTAAAGACAACAACGGCGACACTTACCAGAAAAACTCCAGGTGTTAGCTTGAAGAACTATCACTGTCTTTCTTGCAACACATCATCTTTAAGTTTATCCGAGCTGAAAAAGCACAACTTGAATCATCACAATTCCATAAATCTATGCAATTCGACACAACAGCCAACTAATACTACATCAAGCTCTTCCATTAAGAAACAAGCCGGAATGAACTCAAGTGGCTCTTATCCTTGTGTTCAGTGTGACAAATCATTCAAGAATCAATACTTACTGCAAAGACATAATGCAGCTATCCACAGTTCCAACAAGTGTAACGTATGTggcaaacattttaacaaactaaTTGATTACAAAGTCCATATGAAAAGATTCGTTGACACCAAGCATTTTGCGTGTGATCATTGCAATGCGACTTTCAAGGATAAATTGCAAATGACGAGACATGAACAAATACATACAGATGACAAGAGATACATGTGTCGATTCTGCGACTACTCTGCCTATTACGTTACCAGAATAAATACCCATGAGAGGAAACATACAGGTAACTATAGGCACAGATGCGAGGTATGTAACAAAGGTTACAACTCATTACAGAATTTGGAATCACACACTATATCCGTACACAGTGCAGAACCTCACAAGTGCGGTTTTTGCGGAAAATCTTACACCTCAAAATATAGATACAATCGTCATTTACTTGAACACAAACCAAATTATATCCccgaaaataaatttcaatgtgACACTTGCGGTAAAACGTTCAAGAGGGCGCCTCAACTCAAGAAACACATGGTCTGTCATCTTGCGGTGAAGCCGTTCGAATGTAACCAGTGTGGGAAGCGCATTGCGAGCAGATCTTCACTGAAGAACCACATCAGGACCCACACTGGCGAGCGTCCCGCTGTCTGCAACGTTTGTGGCAAGGCTTTCCCTCGTCCCTACCTCGCCACCCATATGCGTTCACACACTGGCGCTAAACCTTTCACCTGCACTACATGTGACAAAAGTTTCACCCAGCGGTCCACTCTTGTGATCCACCAAAGATCCCACACAGGACTTAGACCATATCAATGTCCCACCTGCAGCAAGGCCTTTGTCACCAAGACTCTTTTGAACTATCACCAGAAggtgcatttaaaataa
- Protein Sequence
- MSSQTQLKTTTATLTRKTPGVSLKNYHCLSCNTSSLSLSELKKHNLNHHNSINLCNSTQQPTNTTSSSSIKKQAGMNSSGSYPCVQCDKSFKNQYLLQRHNAAIHSSNKCNVCGKHFNKLIDYKVHMKRFVDTKHFACDHCNATFKDKLQMTRHEQIHTDDKRYMCRFCDYSAYYVTRINTHERKHTGNYRHRCEVCNKGYNSLQNLESHTISVHSAEPHKCGFCGKSYTSKYRYNRHLLEHKPNYIPENKFQCDTCGKTFKRAPQLKKHMVCHLAVKPFECNQCGKRIASRSSLKNHIRTHTGERPAVCNVCGKAFPRPYLATHMRSHTGAKPFTCTTCDKSFTQRSTLVIHQRSHTGLRPYQCPTCSKAFVTKTLLNYHQKVHLK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447834;
- 90% Identity
- iTF_01445021;
- 80% Identity
- -