Tbar014812.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000919.1:65947-68392[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.001 0.23 14.2 0.1 1 20 88 107 88 109 0.94 2 13 0.00036 0.08 15.6 2.0 1 23 115 137 115 137 0.98 3 13 0.00024 0.053 16.1 1.3 3 23 147 167 145 167 0.96 4 13 2.5e-07 5.5e-05 25.5 2.0 1 23 173 195 173 195 0.98 5 13 0.0017 0.37 13.5 0.0 1 23 201 224 201 224 0.97 6 13 8.2e-06 0.0018 20.7 0.4 2 23 269 290 268 290 0.96 7 13 0.059 13 8.6 0.1 2 23 299 320 298 320 0.97 8 13 2.1e-06 0.00047 22.6 0.5 1 23 352 374 352 374 0.98 9 13 3e-06 0.00067 22.1 0.6 1 23 380 402 380 402 0.98 10 13 0.00011 0.025 17.2 0.1 1 23 408 432 408 432 0.98 11 13 0.00079 0.18 14.5 1.5 1 23 438 460 438 460 0.97 12 13 0.00039 0.087 15.5 1.6 1 23 466 488 466 488 0.99 13 13 0.02 4.6 10.1 0.1 2 19 498 515 497 515 0.94
Sequence Information
- Coding Sequence
- ATGCTTGAGGAGAGGGGAAAGAAGAGCTATCAAGCTATCACCGGCTTGAAGGAAGAGACGGGGGAGGGGGAAAACATCTACCTTATTTCGAGTTTGAAGGAAGAGACAGGGGAGGGGTGGAAAGACTGCATTCTCTTTTTTTACTATCTCACACAGGTGTGTGACGAGCCCAACTCAAAgtcaaaagaagaaaaagttgGCCAACCCAGGCTTGCCAAAACTGTAAAGAAAAAGCCAACATTCAGGGCCATGTCTGTGCGTTTCATGTGCCCAACATGTGGGATCCAGTTTTTTACAGCGGATAAGCTCACGGAGCACCTCGCAAGGCTCCCCAAAGAGGGTTTTGTCTGTGAGACCTGCAATAACAAGTTCTGTACATTGGGTATGCTGAACGCCCACAAGCGTGTGCACTCTCGCGGCAAGTTTGCGGCCAGCATCTGCGAAGTCTGCGGGAAGCACCTTCCGAACAAATCGAGCTACAACCGGCACAAACAGATTCACTCAGGTGAGAAGAACTTCAAATGTGGCTACTGTGGCAAGGCTTTTGTCCGCAAGCACGCTCTTAAGGTCCACATGTATTCACACCCTCTGAAAGAAGACTACTCATGCCTGGAGTGCTCAATATCATATGAAGACATTGAGGGTCTACAGAGACATGTCAGGATTGCTCATAAAGATGAGGATGAGACACTCTTGTGTAACATCTGTAAAGAGCATGTGGAAGTTCCCCTGTTTATTGACCACTACAAGGCTTGCCACCTTCTCAAGGAGGATGAAATGCTCTCCAGACGGCTCAGCGTTGTGACTTGCCAAATCTGCTCCAAGGTGTTTTCCACACCGGCGACCTTAAATCGTCATTCGAAGCTCCACAATCCTTTGTTCAGTCGGGCCAGCACTTGCGAGATCTGCCAGGAGACTATTGTCGGGCGGAGAAACGTCATATCTCATGCCAGGACTCACTATGACGAGTCCAACATGCCAGAGAAATACCAGCGAATCATTCGTTCGCTGGTACGGGATCAGAAGTACCGGAAGACTGCGGCACAGAAGAGCTACATCTGTGAGTATTGTGGACGTGAGTTTAACAAGACTATAAACCTCCAAATTCACATCCGACGTCATACTGGTGAGAAACCTTATATGTGCCAGATGTGTGGGATGGCGTTTTACACTCGTCAGCAACTGTCTATCCACATCCGAACACATACAGGTGAACGTCCTTACACTTGCAAGGCCGCTGGCTGTGGCAAGACATTCTCCAGCCCTGCGGCTATCTACATGCACAGGAAGATCCACAACGATGCACAGATGTACCGGTGCCACATCTGTGAGAAGACTTTCGCCAAACGACTAACATATATTGGCCACGTTCGAGCACATACTAATGAGCGGCCATTTAAGTGCTCACAGTGCTCTGGTGCATTCACTCTACGGAGCAAGCTGAACTTGCATATGAATAAACACAAGCAAGAGGCAGAGAGAGAGGCGCTCACATGCTCAGACTGCAATACTACGTTTGCAACAGTGGAGGATTTGGACGCACATTGTGCAGACCAGTGCTACATCACTGTGCACACATATGAGGAGGGAGAGGAGCTGGATATTGACGGTCAAGCCCAAGTCATTGTTTTGAACCCGGAGGACTTTGCTGACATTGAGAACAGTTTTATTGAAGAAGAGGATGGACTTTAA
- Protein Sequence
- MLEERGKKSYQAITGLKEETGEGENIYLISSLKEETGEGWKDCILFFYYLTQVCDEPNSKSKEEKVGQPRLAKTVKKKPTFRAMSVRFMCPTCGIQFFTADKLTEHLARLPKEGFVCETCNNKFCTLGMLNAHKRVHSRGKFAASICEVCGKHLPNKSSYNRHKQIHSGEKNFKCGYCGKAFVRKHALKVHMYSHPLKEDYSCLECSISYEDIEGLQRHVRIAHKDEDETLLCNICKEHVEVPLFIDHYKACHLLKEDEMLSRRLSVVTCQICSKVFSTPATLNRHSKLHNPLFSRASTCEICQETIVGRRNVISHARTHYDESNMPEKYQRIIRSLVRDQKYRKTAAQKSYICEYCGREFNKTINLQIHIRRHTGEKPYMCQMCGMAFYTRQQLSIHIRTHTGERPYTCKAAGCGKTFSSPAAIYMHRKIHNDAQMYRCHICEKTFAKRLTYIGHVRAHTNERPFKCSQCSGAFTLRSKLNLHMNKHKQEAEREALTCSDCNTTFATVEDLDAHCADQCYITVHTYEEGEELDIDGQAQVIVLNPEDFADIENSFIEEEDGL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446832;
- 90% Identity
- iTF_01446832;
- 80% Identity
- -