Tbar005145.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:179353-180354[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1e-05 0.0091 18.6 1.4 2 23 25 46 24 46 0.96 2 11 1.6e-05 0.0036 19.8 3.8 3 23 53 73 52 73 0.98 3 11 0.00047 0.11 15.2 1.0 1 23 79 101 79 101 0.98 4 11 7e-05 0.016 17.8 0.8 1 23 107 129 107 129 0.97 5 11 4.2e-05 0.0095 18.5 1.4 1 23 135 157 135 157 0.97 6 11 3.2e-05 0.0072 18.9 4.4 1 23 163 185 163 186 0.96 7 11 3.6e-06 0.0008 21.9 0.3 1 23 196 218 196 218 0.96 8 11 5.2e-05 0.012 18.2 0.3 1 23 225 247 225 247 0.96 9 11 3.2e-08 7.2e-06 28.3 1.6 1 23 253 275 253 275 0.98 10 11 4.2e-07 9.5e-05 24.8 2.0 1 23 281 303 281 303 0.98 11 11 1.1e-06 0.00025 23.5 1.1 1 23 309 331 309 331 0.98
Sequence Information
- Coding Sequence
- ATGTGGTCCGGGGTTTCTCTAGCCAAGCAGCAAGAGAACGCGGACGGCGGGTCTCGGAACGGCTCTAAACAGGAGTGTCAATCCTGCAACAAGGCGTTCAACAACAGGACGAAACTAGTGAGGCACTTAAGAGAGCACGAATCCAAAGATAAGATCTGTAAGATATGCGGAAAGACTTTCTTCGGTCACAAAAAGTTGAGGAACCACATGCGGTCGCATTTGAAAGAAAGGCCGTTTGTTTGCGACAGATGCAGTAGGGCGTACAAGACCCAATTCGAGCTTAATGGGCACAAGAAGATACACACTGCAGAAAAGAGTCACGTGTGTGACGTGTGTGGGTATGCCACCATCTACAAGGCCTATTTGAAGGTCCATCAGAAAAGACACATGCGCCAGTTTAGGTTTAACTGCGACATTTGCGGGAAAGGGTACTACACAAACTGTGAGCTGCAGATCCACAAAAATGTCCACACGGGTGAGAAACCGTTCCAATGTGATGCGTGCGGGAAGGCATACATACACAAGCACTATTTGGTCGCTCACCAGCGCTCGCACCATCCGGAACTGCAGGACGACATGACGCCTTACTCATGCGAGATCTGCGGGAAAGTGTTTGCGTACAAAAAGAGTCTGATGATGCACACTAGCGCTCATATGGGGGAGAACCAAACCTACCTCTGCGACCTGTGTGGTAAGGCCATGACGAGCAACGCGTCGCTCAAGATTCACAGGAGGACCCATACAGGGGAGAGGCCGTTTGTGTGCGACTCTTGCGGTAAGAGTTTCAATCGCAGGAATAATTTGCGAATCCACCAGCGGACTCACACCGGGGAGAAACCATATTCGTGTGATCAGTGCGACAAGACTTTCACACAACGCTCGACGTTGGTAATTCACAGGCGGTACCACACGGGGCAGAGGCCTTACGTGTGCCAGCTGTGCGGCAAGGACTTTGTCTCTAAAACGCTGTTGAGGACCCATCAAAAGAGTCACGGACCTTAG
- Protein Sequence
- MWSGVSLAKQQENADGGSRNGSKQECQSCNKAFNNRTKLVRHLREHESKDKICKICGKTFFGHKKLRNHMRSHLKERPFVCDRCSRAYKTQFELNGHKKIHTAEKSHVCDVCGYATIYKAYLKVHQKRHMRQFRFNCDICGKGYYTNCELQIHKNVHTGEKPFQCDACGKAYIHKHYLVAHQRSHHPELQDDMTPYSCEICGKVFAYKKSLMMHTSAHMGENQTYLCDLCGKAMTSNASLKIHRRTHTGERPFVCDSCGKSFNRRNNLRIHQRTHTGEKPYSCDQCDKTFTQRSTLVIHRRYHTGQRPYVCQLCGKDFVSKTLLRTHQKSHGP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446825;
- 90% Identity
- iTF_01446825;
- 80% Identity
- -