Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010005076.1:40675-48401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7e-06 0.0016 21.0 1.4 3 23 253 273 252 273 0.97

2 12 3.2e-06 0.00071 22.0 1.5 1 23 279 301 279 301 0.98

3 12 1.9e-05 0.0044 19.6 3.8 3 23 309 329 307 329 0.97

4 12 0.00011 0.026 17.1 0.3 1 23 335 357 335 357 0.98

5 12 1.6e-05 0.0037 19.8 1.2 3 23 365 385 363 385 0.96

6 12 3e-05 0.0066 19.0 0.8 1 23 391 413 391 413 0.97

7 12 6.7e-07 0.00015 24.2 5.4 1 23 419 441 419 441 0.99

8 12 9.8e-05 0.022 17.4 1.5 3 23 449 469 449 469 0.99

9 12 2.1e-06 0.00047 22.6 0.1 1 23 516 538 516 538 0.98

10 12 8.3e-06 0.0019 20.7 0.1 1 23 544 566 544 566 0.98

11 12 6.4e-06 0.0014 21.1 0.6 2 23 573 594 572 594 0.96

12 12 0.00072 0.16 14.6 6.6 1 23 600 622 600 622 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7e-06	0.0016	21.0	1.4	3	23	253	273	252	273	0.97
2	12	3.2e-06	0.00071	22.0	1.5	1	23	279	301	279	301	0.98
3	12	1.9e-05	0.0044	19.6	3.8	3	23	309	329	307	329	0.97
4	12	0.00011	0.026	17.1	0.3	1	23	335	357	335	357	0.98
5	12	1.6e-05	0.0037	19.8	1.2	3	23	365	385	363	385	0.96
6	12	3e-05	0.0066	19.0	0.8	1	23	391	413	391	413	0.97
7	12	6.7e-07	0.00015	24.2	5.4	1	23	419	441	419	441	0.99
8	12	9.8e-05	0.022	17.4	1.5	3	23	449	469	449	469	0.99
9	12	2.1e-06	0.00047	22.6	0.1	1	23	516	538	516	538	0.98
10	12	8.3e-06	0.0019	20.7	0.1	1	23	544	566	544	566	0.98
11	12	6.4e-06	0.0014	21.1	0.6	2	23	573	594	572	594	0.96
12	12	0.00072	0.16	14.6	6.6	1	23	600	622	600	622	0.97

Sequence Information

Coding Sequence: ATGAAGACGTCGTCTTCTTTATCTTTAAATGTAGAACACAGCTTCCATAGTAAAAACGAGAAAAATTTCAAAGTGACTGCACCTATAGAAGTAAACATCTCGAGTTGCAACCCTACCATCTCGAGTTGCAGCCCTACCAACATGGTTAAAAAAGAGATTGACTGTGAACACAATCTCTTTTCAAAGAATGTCACTTGTTCTGAAATTGAGAACATGATGCCGTTAGAGTATGTTAAAGTAGAGATCAGTGATGACAATATTGGCATCGAAACTAACCATAATGTTATCAAGTTTACAACATTGTGTGAAGGGAGGAGTATTTCCAATGAAGGTTCCGGTTCTTATCTATCTCCGGACAAACCTGAAATAACTCCAAAGATTGAAGAGGTGGATCAAGTAGTGACGGACGCTGCGGTAGGTGTTAAAGGGGTTCAGCGCAGAAGAGGcagaaatacattaaaaatcagGCAAGCCATGCTTAAGTTCTTAATAGAaTTAACAGAAAATGCAGCTTCAAAAGAACACACCAAATTAACTCTTGATAAATGCACCATCAGGACCAGGTCCAAAACCAACCCCAAACGAGAACTCCCCATTGTGAGATATGTCGACACGATTGCGGTCAAGAGAAGGACAAAGAAGTGCAATATCATGGAGAACAAGACCAAAACTGCCATGACCCAACTCAACATGATATTCCAGAAAGAGCTAGAGAAGTACAAGTTGACAACGTTCGCCGACGATGCAGACTCTGCGTGTCCTGTTTGTAGCAAGATATTCTCCAACAAGAACCATCTCAACTCACACATTAAACTCCACTCGGGTATTAAACCTCACAAGTGTGAGACCTGCACCAAGAGCTTTGCACGCAAGGGAGACTTGGCGATACATGTCCGACGTCACACGGGAGAACGCCCATATGGGTGTGTCCACTGTCAGAAGACTTTTGTGGAGAAGTCGCACCTGCTTAGGCACATCCGAAGTCACACTGGGGACAAGAGTCATGTGTGCACTGTCTGTGGCAGTGCGTTCACTGAGCGTGCAGGTCTTGTGAAGCACCTTCGCAGCCACACAGGTGAACGTCCACATCTTTGTCAGATCTGTGGGAAGGCATTTGCTCAACGAGAGTTCCTTGCTCGTCACAGCCGCACACACACGGGGGAGCGTCCCTTCTCTTGTCCTGTGTGCAGTAAATCCTTCTCGGACCGCTCGACGGCGGTGAAGCACACCAAGCTGCATGCAGGACTTCGCCCCTACACCTGCCCCATATGCAACCGTTGCTTCAGCCAGAAGCAGCACCTGACTGGTCACTTGCGGACCCATGCGGGGGACCGACCCTGGGGATGCAGCACCTGCGACAAGAAGTTTGGCCGTAAAAGTGACCTGGTTGTCCATTCGCGCCGGCACACTGGTGAGCGCCCCCATGCCTACACTCGAAAGTACACACGGGGGCCAAGCCTCACGTGTGCCACTTCTGCGGCCGGTGCTTCTCTGAGAAGGGTCACTCTTGATGGGCACCTGCGAGTTCACACTGGTGAAAAGCCCTACGCATGTGACATTTGCCGACGATCTTTTGCGGATAGAGGTACACTTGTCAACCACATGCGGATACATACAGGAGAGCGGCCCTTTGTCTGCGGAGTCTGCGAGAAGGCCTTTGCACAGAAGGGGTCCTTGCTGAAGCACGAGCGGATCCACAGTGGGGAGCGGCCTTGGACTTGCTCATATTGTGGCAAGTCATTCGCAGACAAGGGCTACTTTGTCAAGCATTCCCGGCTTCACACGGGGGAAAATGTGCACACTTGCGATCTATGTGGGAAGTTCTTTGCCCAGCGTTGTCACCTGGTTAGGCATTCCAAGGTTCATGGAGGGGAGCGAACCACAGATCTACCATCGGCCAATATGACCAGGAAAAACTTGGTCTAG
Protein Sequence: MKTSSSLSLNVEHSFHSKNEKNFKVTAPIEVNISSCNPTISSCSPTNMVKKEIDCEHNLFSKNVTCSEIENMMPLEYVKVEISDDNIGIETNHNVIKFTTLCEGRSISNEGSGSYLSPDKPEITPKIEEVDQVVTDAAVGVKGVQRRRGRNTLKIRQAMLKFLIELTENAASKEHTKLTLDKCTIRTRSKTNPKRELPIVRYVDTIAVKRRTKKCNIMENKTKTAMTQLNMIFQKELEKYKLTTFADDADSACPVCSKIFSNKNHLNSHIKLHSGIKPHKCETCTKSFARKGDLAIHVRRHTGERPYGCVHCQKTFVEKSHLLRHIRSHTGDKSHVCTVCGSAFTERAGLVKHLRSHTGERPHLCQICGKAFAQREFLARHSRTHTGERPFSCPVCSKSFSDRSTAVKHTKLHAGLRPYTCPICNRCFSQKQHLTGHLRTHAGDRPWGCSTCDKKFGRKSDLVVHSRRHTGERPHAYTRKYTRGPSLTCATSAAGASLRRVTLDGHLRVHTGEKPYACDICRRSFADRGTLVNHMRIHTGERPFVCGVCEKAFAQKGSLLKHERIHSGERPWTCSYCGKSFADKGYFVKHSRLHTGENVHTCDLCGKFFAQRCHLVRHSKVHGGERTTDLPSANMTRKNLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450796;
90% Identity: -
80% Identity: -