Tbar018254.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010001237.1:62859-67268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00023 0.052 16.2 1.0 1 23 125 147 125 147 0.95 2 13 5e-05 0.011 18.3 0.6 1 23 153 175 153 175 0.96 3 13 1.5e-05 0.0033 19.9 1.2 1 23 201 223 201 223 0.97 4 13 4.7e-07 0.0001 24.7 1.2 1 23 229 251 229 251 0.99 5 13 0.00039 0.087 15.5 1.9 1 23 272 294 272 294 0.96 6 13 2.4e-06 0.00053 22.4 0.3 1 23 302 324 302 324 0.96 7 13 0.00011 0.025 17.2 0.4 1 23 330 352 330 352 0.97 8 13 2.7e-05 0.0061 19.1 0.1 1 23 358 380 358 380 0.96 9 13 1e-05 0.0023 20.4 6.2 1 23 386 408 386 408 0.98 10 13 1.1e-05 0.0026 20.3 1.3 1 23 414 436 414 436 0.97 11 13 0.00094 0.21 14.3 2.6 1 23 442 464 442 464 0.94 12 13 0.00017 0.039 16.6 3.7 1 23 470 492 470 492 0.98 13 13 6.6e-05 0.015 17.9 3.8 1 23 498 520 498 520 0.98
Sequence Information
- Coding Sequence
- ATGAAACATCTCCTGCCGATAGCTCAGAAGGGGTGGAAGACTCAAGATGTCAAGGAAGAAAATAGTGTATGTCCAGTTAGACCAGAAATTTTACCAGAAAATATTTCACAGAGAAACAGCTCTGAAGTGGACAGTCATAATGAAGTGGAAGATGACAATGCACATCTGTTTTGTGATGTGAACATCATCGAGAATGGCAACATGGACTCAGCAGAAGAGGGAGGCGGTTGCCGGGAGGAGAGTGACTCTGATGAATCAAAGTgcaaagaagaaattaaaaatacacctgAAAAAATCAACAAGGTTAGCAAAGAAAAGGGCTTAAACCAACCagtgacaaataaaagtaaaaatgatgACGACAACCCAAAATTCTCATGTGaagtttgtttgaaaacattttcgAAGCGCGCCTACCTTAGGCAACATAAAATCGCCCACAATGGTACAAGGCCACATATTTGCTTGGAGTGTAACAGTAAATTTATTCGTCCTGGGGATCTCACCAGACACATAAAAATACATGACAGAGGCAAAATGATCAGAGATAAACAACCTGCGaacatattcaaaaaaattgttcccaTCAAAGAAACTTTATTCAGCTGTAAAGTGTGCTCAAAGACTTTTACCAAGCTTGTATACCTTAGACGACATGTTATAATCCATAGTGATAGACGTCCTTATGAGTGCAAGGTTTGTAAAAACACATTCACTCGAAGTGGCGACCTTAGTAAACACATGCGAATCCACACTCGAGAGTTGACCATGTTGGAGAAAGAGGACACAGCCATTCATGAGTATGCGGGAGAATTTGTATGCAAACTCTGTTCACGCTCGTTCAGTAAAGAGTTCTACCTGAAGCAGCACACTGTGGTACATATAGAGAAAGAGCCCACCACATACTTGTGTGATGAATGCGGCAAAGCATTCAAGCAGCGAGGGGCACTCACACAGCACAAGGCGACCCACTCCACTGTCAAATCTCACGTCTGTAGTGACTGTGGGAAAGCGTTTGCATTTATTGGGAGGTTGCGTGACCACCTGAAGGTGCATGCAGGTGTCAAACCTTACCTCTGTAACATCTGTGGAAAGGCGTTTGCGGCCAGGGAAGGTCTGTTTGCACATGAGCGTACACACACAGGAGAAAAACCTTATTGTTGTAACCTATGTCCACGTACATTTGCAACATCATCTAACTATCGCACACACATGCGGCATCATACAGAGGGGAAGCGCTTTCCATGCACTCACTGTCCCACGGCGTTCTTCACCAAATCTGGGCTGGAGAGGCATGAGCGCTTACACTCGggtgtcaaaccattcgcttgTGATATCTGCTCTGTTTGCTTCTATACCAAACGAGAGCTCATTAGGCACAAGTTATTTCACCTGGGTAACAAGAGATTTTCCTGCGACCGCTGTAACAAATCATACTATGAGCGGCAGCACCTCGTTATCCATCAGCGGACTCACACAGGGGAGCGACCCTATGTTTGCAACTGGTGCAGTAAGTCCTTCTATGAGTGCTCCAAACTTAAGAGACATGCACAAACTCATGTTAGGGACAAAGTGTGA
- Protein Sequence
- MKHLLPIAQKGWKTQDVKEENSVCPVRPEILPENISQRNSSEVDSHNEVEDDNAHLFCDVNIIENGNMDSAEEGGGCREESDSDESKCKEEIKNTPEKINKVSKEKGLNQPVTNKSKNDDDNPKFSCEVCLKTFSKRAYLRQHKIAHNGTRPHICLECNSKFIRPGDLTRHIKIHDRGKMIRDKQPANIFKKIVPIKETLFSCKVCSKTFTKLVYLRRHVIIHSDRRPYECKVCKNTFTRSGDLSKHMRIHTRELTMLEKEDTAIHEYAGEFVCKLCSRSFSKEFYLKQHTVVHIEKEPTTYLCDECGKAFKQRGALTQHKATHSTVKSHVCSDCGKAFAFIGRLRDHLKVHAGVKPYLCNICGKAFAAREGLFAHERTHTGEKPYCCNLCPRTFATSSNYRTHMRHHTEGKRFPCTHCPTAFFTKSGLERHERLHSGVKPFACDICSVCFYTKRELIRHKLFHLGNKRFSCDRCNKSYYERQHLVIHQRTHTGERPYVCNWCSKSFYECSKLKRHAQTHVRDKV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450803;
- 90% Identity
- iTF_01450803;
- 80% Identity
- -