Tbar005144.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:171718-175940[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.6e-05 0.0037 19.8 2.3 1 23 10 32 10 32 0.98 2 20 4.4e-05 0.0099 18.4 0.3 1 23 38 60 38 60 0.98 3 20 6.7e-06 0.0015 21.0 2.0 1 23 66 88 66 88 0.97 4 20 4.3e-05 0.0097 18.5 5.5 1 23 93 115 93 115 0.98 5 20 8.1e-05 0.018 17.6 1.2 1 21 124 144 124 146 0.94 6 20 1.3e-06 0.0003 23.2 0.3 1 23 152 174 152 174 0.98 7 20 0.00011 0.024 17.2 2.4 1 21 180 200 180 202 0.95 8 20 8.3e-08 1.9e-05 27.0 1.0 1 23 208 230 208 230 0.98 9 20 0.014 3.2 10.5 3.7 1 21 236 256 236 258 0.95 10 20 0.0076 1.7 11.4 2.7 2 23 309 330 308 330 0.97 11 20 0.027 6 9.7 1.8 1 20 336 355 336 358 0.93 12 20 0.00034 0.077 15.6 4.5 1 23 364 386 364 386 0.96 13 20 4.7e-05 0.011 18.3 0.6 1 23 392 414 392 414 0.98 14 20 3.7e-06 0.00083 21.8 2.3 1 23 420 442 420 442 0.98 15 20 0.0017 0.38 13.5 6.3 1 23 447 469 447 469 0.98 16 20 9.5e-07 0.00021 23.7 1.4 1 23 478 500 478 500 0.98 17 20 5.5e-05 0.012 18.2 3.1 1 23 506 528 506 528 0.97 18 20 2e-05 0.0045 19.5 0.3 1 23 534 556 534 556 0.98 19 20 1.9e-07 4.2e-05 25.9 3.7 1 23 562 584 562 584 0.98 20 20 0.0018 0.4 13.4 3.8 1 21 590 610 590 612 0.94
Sequence Information
- Coding Sequence
- ATGCTTCAACACACGACGGATCAGCCTTACTCGTGCGACATTTGCAACAAGGCCTTCAGGCATGAGTACGCGTTgataaatcacaaaaaatatcaCGCAGGTATAAAAGAGTTTGTCTGCGACATATGCAACTATGCGTCCGATCGTAAAGCCTCCCTGAAAATACACATCAAGAGACATACACGCGAAGCCCTTCACCCCTGCAACATGTGCGAGAAGAGTTTCTACACAAATTCCGAACTGAAAGTACACAAGAATATACACTTTGGCAGGAAGCACAAATGTGAAATTTGCGACAGGTCGTTCACGCACAAAAGGAACATGTTGTTGCATCAACAGTCCCACGACCCGATGAAGGAGGTAAGGATATTTCCGTGCGAGATTTGCGGTAAGACCTACCGTCGCAAGACCAGGTTAGCCGTGCACATCATGTGCCACAAGGGGGAGGGCAAGTTTGTATGCGACGTATGCGGAAAGATCGTGACGAGTAGCAGTTCCTTGAAAACACACAGGCGAGTTCACACAGGAGAGAAACCGTACGTGTGTGACCTGTGCGGGAAGGCGTTCAACTCGTCCAACTATCTGCGCGTGCATAAACGGTGTCATACTGGTGAGAAACCCCATACATGCGAGCGGTGTGGTAAATCCTTCACTCAGCGCTCGGCGCTCATTGTGCATATTAGGGTTCACACCGGCCAAAGACCTTACGAGTGTCGCATATGCTACAGACAGTTTATTACCAGGACACTGTTGAATACTCATTTGAAATGTCACGAgtATGCAGAATTGTTTGAGAAATCTGACTCAACGTCATGGAACACTCAAGACAGTTGccacaataaaaacaaagaaggTGAAGAGTTGATCAGGAGGTATAAGCTACCTACTATTGTCGTGAAAAGACAAACAATCTCACAGGCAAAGAGTTGTAATCTTTGCGCAAAATCCTGCAAGTCGGAAGCTGGGCTTAAAATCCATAAAAAGACCCATTTATCTAAAAAAGCATTCCACTGCGAGTTTTGCGGCAAAGTGTTTGCAGCCGTCAATCTGTTGTCGAGGCATCTGGCGTGTCACATGACTGATCGGCCGTTCCCGTGCGACATATGTCAGAAATCTTTCAAACGCAAACAGTGTCTCGTTGACCACAAGAAGTTTCACGCAGGTGTAAAGGCgtttgtttgtgatatttgcAGCTACGCGACCAGTCACAAGGCCTCGCTCGAAGTCCACATAAAGAGACACACCTGTGAAGCGCACTTTCCCTGCGACACCTGCAGCAAAAGTTTCTACACCAACTCGGAACTCAGAActcataaaaacacacacatcgGCAAGATGCataaatgtgaattttgtgAGAGGATATTCATacacaagaaaaatatgttgagCCATCAAAAAACTCATGACCCAGCGAGGGAAATAAAGAAGTACCCGTGCGAGATTTGTGGTAAAATCTACCGTCGCAAGCATAGACTCACGGTGCACATCCGTTCCCACAGCGGGGAGCAAAAGTTTATTTGCGATGTCTGCGGGAAGTGCGTGACGAGCAGTGTGTCCTTGAAGACTCACCACAGGCTTCATACAGGGGAGAAGCCCTTTGTTTGCGACGTGTGTGGGAAGGCGTTCATCTCGACCAACTATCTGCTCATTCACAAGCGCTCACATTCCGGGGTAAAACCTCACACGTGCAAACAGTGCGGGAAATCGTTCACTCAGCGTTCGACGCTCGTCGTACATATGAGGTACCACACTGGTCAGAGGCCGTACGAGTGTCTCATGTGCGACAAGCGATTTGTTACGAGGACGTTGTTGAATACCCATAAAAAATGTCATGATTAG
- Protein Sequence
- MLQHTTDQPYSCDICNKAFRHEYALINHKKYHAGIKEFVCDICNYASDRKASLKIHIKRHTREALHPCNMCEKSFYTNSELKVHKNIHFGRKHKCEICDRSFTHKRNMLLHQQSHDPMKEVRIFPCEICGKTYRRKTRLAVHIMCHKGEGKFVCDVCGKIVTSSSSLKTHRRVHTGEKPYVCDLCGKAFNSSNYLRVHKRCHTGEKPHTCERCGKSFTQRSALIVHIRVHTGQRPYECRICYRQFITRTLLNTHLKCHEYAELFEKSDSTSWNTQDSCHNKNKEGEELIRRYKLPTIVVKRQTISQAKSCNLCAKSCKSEAGLKIHKKTHLSKKAFHCEFCGKVFAAVNLLSRHLACHMTDRPFPCDICQKSFKRKQCLVDHKKFHAGVKAFVCDICSYATSHKASLEVHIKRHTCEAHFPCDTCSKSFYTNSELRTHKNTHIGKMHKCEFCERIFIHKKNMLSHQKTHDPAREIKKYPCEICGKIYRRKHRLTVHIRSHSGEQKFICDVCGKCVTSSVSLKTHHRLHTGEKPFVCDVCGKAFISTNYLLIHKRSHSGVKPHTCKQCGKSFTQRSTLVVHMRYHTGQRPYECLMCDKRFVTRTLLNTHKKCHD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446806;
- 90% Identity
- iTF_01446806;
- 80% Identity
- -