Tbar005138.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000211.1:130597-135695[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 7e-05 0.016 17.8 0.8 3 23 43 63 41 63 0.94 2 23 7.1e-05 0.016 17.8 2.2 1 23 69 91 69 91 0.98 3 23 1.9e-06 0.00043 22.7 2.2 1 23 97 119 97 119 0.98 4 23 0.00056 0.12 15.0 0.5 1 23 125 147 125 147 0.98 5 23 3.5e-05 0.0079 18.8 1.4 1 23 153 175 153 175 0.97 6 23 4.2e-05 0.0094 18.5 0.9 1 23 181 204 181 204 0.97 7 23 7.4e-05 0.017 17.7 0.6 1 23 214 236 214 236 0.97 8 23 5.2e-05 0.012 18.2 0.6 1 23 242 264 242 264 0.95 9 23 2.9e-06 0.00066 22.2 1.4 2 23 271 292 270 292 0.96 10 23 1.1e-05 0.0024 20.4 3.3 1 23 298 320 298 320 0.97 11 23 1.2e-05 0.0026 20.3 0.4 1 23 326 348 326 348 0.98 12 23 0.2 44 7.0 0.3 2 23 392 412 392 412 0.90 13 23 0.02 4.5 10.1 1.5 3 23 420 440 418 440 0.90 14 23 0.0032 0.72 12.6 2.8 1 23 446 468 446 468 0.97 15 23 0.00011 0.024 17.2 2.8 1 23 474 496 474 496 0.98 16 23 0.0042 0.95 12.2 4.9 1 23 502 524 502 524 0.97 17 23 0.00043 0.096 15.3 1.3 1 23 530 552 530 552 0.98 18 23 2e-06 0.00046 22.6 0.8 1 23 558 580 558 580 0.98 19 23 2.4e-05 0.0055 19.3 3.7 1 23 591 613 591 613 0.98 20 23 0.00029 0.065 15.9 3.5 1 23 618 640 618 640 0.92 21 23 5.1e-05 0.011 18.2 0.1 2 23 647 668 647 668 0.97 22 23 1.2e-06 0.00026 23.4 1.4 1 23 674 696 674 696 0.97 23 23 0.00024 0.055 16.1 0.8 3 23 704 724 702 724 0.98
Sequence Information
- Coding Sequence
- ATGTCAAGTAAATCGAAAAGGAAAGTACGGAAAGGGAAGTCGAATTGTAAAGTTCCTGGAGAAACGTCTAACACGTGCAAGTTGGACATTCATGAAATGTTCAGCAAATCAACTTCCTCCCACTTGTGTCCTCCGTGCGATAAAACTTTCAACAGTAAAAGAGAACTTGAAGCACACCTAAGACTCCACGTGAATCCTACAGAGTTTATTTGTGAACACTGCAACAAAGTATTTACAGCAAATAAACGGTTGGCAAACCATCTTAAAACGCACATCAAGGATCGCCCTTATTCCTGTGACATATGCAACAAGTCATACAAGCGTAGATACGAACTGACCATGCACAAGAGGATACATACAGGGCTAAAAAGTTTCATCTGTAATATCTGTGGGTATGCTACGATGTACAAAGGGTACCTTAATATCCATTATAAAAGGCATTTAAACCAATTTAGGTTTAagtgtaatatttgtaaaaaaggGTTCTACACAAACTTCGAACTTCAAGTTCATAACAACGTCCATACCGGCACGAAACCGCACCAATGCGACGTTTGCGGTAAAGCGTTCCTGTACAAAGCCAACTTGCTGACTCACCAGAGAGTAAACCACGAAAACTTGCAGATGTTTCCCGCCTTGTTCCAGTGCGAGGTTTGCAGCCGCAGTTTCCCGTACAAAAAGTCTCTCTTGTTACACTTGAACGCCCATTCGGGCGATATCCAGTTCCTGTGCGATGTGTGCGGCAAGTCGCTGACCAACGCGCGGTCTCTGAAACTCCACCGGCGTCTCCACACGGGGGAGAAACCGTGCGTGTGCGGTGTTTGTGGGAAGGCATTCACCAAGAGCTACACCCTGAAGGTACACCAGCTGACCCACACGGGGCAGAAACCTCACTCTTGCGACGTCTGTAACAAATCTTTCACCCAGCGCTCGACGCTCGTGGTTCACAAGCGCTACCACACGGGGCAGAGACCCTATATGTGCCCCATCTGTAACAAGGGTTTTGTGGCCAAGACCATGCTCAACTCGCATCAGAGAAACCACGACCCAAGATGCAGCCTTCCGCAgGATGAAAATGATAGTAATGAGGAAACTTGCGGCAGTCCACGAGAGCTGATTAAAGGCGGCTCTTCGTTTCAGATCAGATTACAGGCTAGGAGAACAGACTTTGAAAAATGTAGAGTGTGCGGGGAACGGTTCAGTCCTGAAAAATTTATCCTACACAAAGTAATCCACACAGGTCTCAAACCTCACATCTGCATCCTATGTGAGGCCAAGTATAGCACGAAAACCAAACTCCGGATCCACATGAAGATCCATAACGGCATGAAAGAGTTCAGATGCGAAACCTGCGGTAAAGAGTGCCTGAGCAGGAAACTTCTTCGGAGGCACATGGGTAGCCACAGTGAGGACCGGCCTTTCGAATGCGAAATCTGCTTTCGGAAATTCAAACGCTCTTACGAAGTCACCAAGCACAAAAAGATCCACATAGGGGAGAAGAACCACGTTTGTAATATTTGCGGCTACGCGACTATGCACAAGGCGTGTTTGGAAACCCACCAGAAACGGCATTTGGGGGAGTTTATCTTCAAGTGCTTGGTTTGCGGTAAGGGTTTCTTCTCGAGCTTTGAGTATAGAGAGCATAAGAATGTTCACACGGGTGATAAACCTTACATGTGTGACATGTGTGGGAAGGCGTATACTTCTAAGAACAGTCTGATGGCGCACAAGAAGACTCACGAACCCGACGCCAAGCCGACGGAAAAGGTGCATCGGTGCGGCTACTGCGATAAAAGTTTCAAGTATCGAAAATCTCTTCTTGTGCACGTCAAGTCGCATTCGGGAGAGAAGTTTCTCTGCGATTTTTGTGGCAAGGCGTTCTCAACTAAAGACAGCCTTAAACTTCACTGCCGCAACCATACGGGCGAGAAGACGAATGTGTGCACGGTATGTGGGAAGGCGTTCAGTGCGCTCTACACGCTCAAAGTTCACCAACTTATCCACACGGGCGAGAAGCCTCATGTTTGTGATATGTGTGGTAAGGCGTTCACCCAGAGGTCTACTCTTGTGGTTCACAAGCGCTCACACACTGGAATGCGTCCATACGGTTGTCACATCTGTGCTAAAGGTTTTGCATCTCGGACGCTTTTGAACAATCATTTGAAGATTCATGACGAAGATGTGTATTACAAACACTTAGGGGTGATCTGA
- Protein Sequence
- MSSKSKRKVRKGKSNCKVPGETSNTCKLDIHEMFSKSTSSHLCPPCDKTFNSKRELEAHLRLHVNPTEFICEHCNKVFTANKRLANHLKTHIKDRPYSCDICNKSYKRRYELTMHKRIHTGLKSFICNICGYATMYKGYLNIHYKRHLNQFRFKCNICKKGFYTNFELQVHNNVHTGTKPHQCDVCGKAFLYKANLLTHQRVNHENLQMFPALFQCEVCSRSFPYKKSLLLHLNAHSGDIQFLCDVCGKSLTNARSLKLHRRLHTGEKPCVCGVCGKAFTKSYTLKVHQLTHTGQKPHSCDVCNKSFTQRSTLVVHKRYHTGQRPYMCPICNKGFVAKTMLNSHQRNHDPRCSLPQDENDSNEETCGSPRELIKGGSSFQIRLQARRTDFEKCRVCGERFSPEKFILHKVIHTGLKPHICILCEAKYSTKTKLRIHMKIHNGMKEFRCETCGKECLSRKLLRRHMGSHSEDRPFECEICFRKFKRSYEVTKHKKIHIGEKNHVCNICGYATMHKACLETHQKRHLGEFIFKCLVCGKGFFSSFEYREHKNVHTGDKPYMCDMCGKAYTSKNSLMAHKKTHEPDAKPTEKVHRCGYCDKSFKYRKSLLVHVKSHSGEKFLCDFCGKAFSTKDSLKLHCRNHTGEKTNVCTVCGKAFSALYTLKVHQLIHTGEKPHVCDMCGKAFTQRSTLVVHKRSHTGMRPYGCHICAKGFASRTLLNNHLKIHDEDVYYKHLGVI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445840;
- 90% Identity
- iTF_01445840;
- 80% Identity
- -