Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000211.1:74573-91784[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 33 4 9.1e+02 2.8 2.9 4 23 51 70 51 70 0.93

2 33 0.23 51 6.8 0.2 1 13 76 88 76 89 0.87

3 33 0.011 2.5 10.9 0.4 2 20 130 148 129 151 0.92

4 33 0.0015 0.33 13.6 4.7 3 23 159 179 159 179 0.99

5 33 6.1e-05 0.014 18.0 2.9 1 23 185 207 185 207 0.98

6 33 0.068 15 8.4 7.2 2 23 214 235 213 235 0.95

7 33 0.023 5.2 9.9 0.4 1 23 241 263 241 263 0.96

8 33 3 6.8e+02 3.2 0.6 1 12 273 284 273 293 0.71

9 33 3.7e-05 0.0083 18.7 1.2 1 23 298 320 298 320 0.95

10 33 9.6e-07 0.00022 23.7 0.5 2 23 327 348 327 348 0.97

11 33 1.6e-07 3.7e-05 26.1 2.4 1 23 354 376 354 376 0.98

12 33 0.0054 1.2 11.9 2.6 1 23 457 479 457 479 0.98

13 33 0.00068 0.15 14.7 0.1 2 19 486 503 485 504 0.94

14 33 0.019 4.3 10.1 0.9 2 23 514 535 513 535 0.93

15 33 4.3e-07 9.8e-05 24.8 2.8 1 23 541 563 541 563 0.98

16 33 8.8e-05 0.02 17.5 0.4 2 23 598 619 597 619 0.96

17 33 1 2.3e+02 4.7 0.1 2 13 630 641 629 646 0.81

18 33 0.0064 1.4 11.6 0.3 1 23 654 676 654 676 0.95

19 33 1e-06 0.00023 23.6 0.6 2 23 683 704 683 704 0.97

20 33 4.4e-07 9.9e-05 24.7 2.4 1 23 710 732 710 732 0.98

21 33 0.0041 0.92 12.3 0.8 5 23 739 759 737 759 0.89

22 33 0.0054 1.2 11.9 0.3 2 17 766 781 765 782 0.92

23 33 0.074 17 8.3 1.4 1 14 793 806 793 810 0.87

24 33 1.1 2.6e+02 4.6 1.5 9 23 810 824 808 824 0.93

25 33 2.2e-05 0.0049 19.4 0.6 2 23 831 852 830 852 0.96

26 33 4.6e-05 0.01 18.4 2.7 1 23 858 880 858 880 0.98

27 33 0.25 55 6.7 6.3 2 23 887 908 884 908 0.93

28 33 0.00078 0.18 14.5 2.5 1 23 914 936 914 936 0.98

29 33 0.53 1.2e+02 5.6 0.7 1 12 946 957 946 966 0.69

30 33 0.014 3.1 10.6 3.9 1 23 971 993 971 993 0.95

31 33 5.7e-06 0.0013 21.2 0.5 3 23 1001 1021 1000 1021 0.98

32 33 9.1e-07 0.0002 23.8 1.6 3 23 1029 1049 1027 1049 0.97

33 33 0.00038 0.085 15.5 1.0 1 23 1055 1077 1055 1077 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	33	4	9.1e+02	2.8	2.9	4	23	51	70	51	70	0.93
2	33	0.23	51	6.8	0.2	1	13	76	88	76	89	0.87
3	33	0.011	2.5	10.9	0.4	2	20	130	148	129	151	0.92
4	33	0.0015	0.33	13.6	4.7	3	23	159	179	159	179	0.99
5	33	6.1e-05	0.014	18.0	2.9	1	23	185	207	185	207	0.98
6	33	0.068	15	8.4	7.2	2	23	214	235	213	235	0.95
7	33	0.023	5.2	9.9	0.4	1	23	241	263	241	263	0.96
8	33	3	6.8e+02	3.2	0.6	1	12	273	284	273	293	0.71
9	33	3.7e-05	0.0083	18.7	1.2	1	23	298	320	298	320	0.95
10	33	9.6e-07	0.00022	23.7	0.5	2	23	327	348	327	348	0.97
11	33	1.6e-07	3.7e-05	26.1	2.4	1	23	354	376	354	376	0.98
12	33	0.0054	1.2	11.9	2.6	1	23	457	479	457	479	0.98
13	33	0.00068	0.15	14.7	0.1	2	19	486	503	485	504	0.94
14	33	0.019	4.3	10.1	0.9	2	23	514	535	513	535	0.93
15	33	4.3e-07	9.8e-05	24.8	2.8	1	23	541	563	541	563	0.98
16	33	8.8e-05	0.02	17.5	0.4	2	23	598	619	597	619	0.96
17	33	1	2.3e+02	4.7	0.1	2	13	630	641	629	646	0.81
18	33	0.0064	1.4	11.6	0.3	1	23	654	676	654	676	0.95
19	33	1e-06	0.00023	23.6	0.6	2	23	683	704	683	704	0.97
20	33	4.4e-07	9.9e-05	24.7	2.4	1	23	710	732	710	732	0.98
21	33	0.0041	0.92	12.3	0.8	5	23	739	759	737	759	0.89
22	33	0.0054	1.2	11.9	0.3	2	17	766	781	765	782	0.92
23	33	0.074	17	8.3	1.4	1	14	793	806	793	810	0.87
24	33	1.1	2.6e+02	4.6	1.5	9	23	810	824	808	824	0.93
25	33	2.2e-05	0.0049	19.4	0.6	2	23	831	852	830	852	0.96
26	33	4.6e-05	0.01	18.4	2.7	1	23	858	880	858	880	0.98
27	33	0.25	55	6.7	6.3	2	23	887	908	884	908	0.93
28	33	0.00078	0.18	14.5	2.5	1	23	914	936	914	936	0.98
29	33	0.53	1.2e+02	5.6	0.7	1	12	946	957	946	966	0.69
30	33	0.014	3.1	10.6	3.9	1	23	971	993	971	993	0.95
31	33	5.7e-06	0.0013	21.2	0.5	3	23	1001	1021	1000	1021	0.98
32	33	9.1e-07	0.0002	23.8	1.6	3	23	1029	1049	1027	1049	0.97
33	33	0.00038	0.085	15.5	1.0	1	23	1055	1077	1055	1077	0.97

Sequence Information

Coding Sequence: ATGAATGGGTTTGTCCTATATGCAATAAAGAAATACTTGCTGCGCCACCTGCCGAGCTATGTGCTCGAGAAAAACCTAGGCTGCGAGATAGCAAGCAGTCTTTCTTACCACAAGAAAGTTCACACCGGAGAGAACAAAAACCCAGTAAAACACGAGTGCGTTGTTTGCTGCAAGTTCTACGTGAACCTGACTATACATCTGAAACGCCACACGGGGGAACGTAACTTCCTGTGCGATCTGTGCGGGAAGAAGTTCAGAGATAATATGATTATGCCACTGCACCAGAGAGAAACAGGAGGTGTGCCACCTTTGCAGGAAAACTTTCGCCTGGAAGATGACTCTGCGCTGCCATATGCGCACCCACACAGGAGAGAGACAAATGGTTGGGTCTGCCCCACTTGCAAAAGGAAGTTCGCAATAAAGAAATACTTGCTGCGCCACTTGCCGAGCCATGTGCTCGAGAGAAACCTGGGCTGCGAGACGTGCGGTCGcaaatttagaaaacattttgagCTGCGATCTCATAGAAGGATTCACACTGGAGAAGGTGTGTACAAATGTGTCCAATGTGGTAAATCGTTTGTCCATAAGAGTATTCTGAATAGCCACTTGAGGTATCATGCCAAGGAATATTCGTGTTTTTGCAAAATTTGCGGTAAGGGCTACCACCATAAAAGTCAACTCGACGAGCATTCGAATAAACACACGGGAGAACGGTCCTTCCCATGCGATGTCTGCGGTAAGAGCTACTTACTCAAAAGAAGCCTGGCTTACCACAAGAAAGTTCACACCGGAGAGAACAAAAACACGGTAAAACACGAGTGTGGAATCTGCGGCAAATTATACGTCAACATTTCGAAACACTTGTACCGCCACACGGGGGAACGTAACTTTCTCTGCGACTTTTGCGGCAAGAAGTTCAACAATAAAGAATCGTTGCTACTTCATGGAAGGACCCACACAGGAGAGAAACCGGAAGTCTGCAATGTTTGCGGCAAGATGTTCGCCAGGATGACGACTCTCCGCGTTCACATGCGCACCCATACGGGAGAGAGACTTTACAGCTGTAACGATTGCGGCAAGAAGTTTACTCAGAGCAGCACACTCACCATACATAGACGCTACCATACGGGGGAGAGACCGTACCACTGTGCAGTCCATGGTGAGGAAGCTGATGAGTTACCTGTGATTGGATTCTCACCAGTGGCGAGGTTTACCAGACGATTTGTAATATACCGAGTTCTTGCTATTGGTGCAGGCAATGAAACTCAACcagatattttaaagaaagcaCAGAACAAAAGAGAAACAACAATTGCAGCTCTAAATCGAAAGAATGAGGTAAAGAGTAGTAAAAtcataaagaaatttaaatgcaaattttgtGACAAAGAATTTGGGAAATCGACCGAACAAAAAGATCACACGTTAACTCACAAAGACAATAACAACTGGGTCTGTCCGGTTTGCCTCAAAAGATTTGCGACCAAGAGGAACTTGCTACGCCACGTCCCGTGCTACGGCGCCGAAAAGAACTTGTCGTGTGAAGTGTGCGGTCGCAAGTTTAGAGCGCCCTCGGCGCTTGAATGTCATAAAAAGTTGCACACGGGAGATGATGTGTTCACATGCGACAAGTGTGACAGAGTTTTTAACAGAAAGAGCTCGTTGAGGAAGCACTTGAAACTTCATTCCAAGGAATATTCGTGTTTCTGTGAGTTTTGCGACAAAGGTTTCTACTGTAAGAACCAGCTTTcgtatcataaaaataaacacacaggCAAGCGGCCTCTAGTGTGTAACATTTGCGACAAGGCCTATATGGTCAGGAGTAGTCTGCATGCCCACATGAGCATGCATAGAGGGGAGAAACAGAAGAGGAAAAAACAAGAGTGCGAGGTTTGTGGCAAGTTTTATGCGAATTTGTCGGTTCATTTGAAATGTCACACGGGGGAACGTAactttttatgtaatttgtgCGGTACGAAATTTTATGAGAAACAAGCGCTGCTGCTTCACGGACGAATCCACACCGGAGAGAAACCGGAAGTCTGCAGCTTGTGTGGCAAGATGTTCGCCCGATTGACGACTCTGCGCGTTCACATGCGCACACACACGGGAGAGAAACTTTACAACTGTAACGATTGCGGCAAGAGGTTTACTCAGAGCAGCACGCTCACCATACATAAACGCTACCATACGGGGGAGAGACCGTACCATTGTGAGAAAGGTTTTGCAACAAAGAGGTCGTTGACGCGTCATCTGCAGCGCAACAGCCATGATACAGAGAGGAACTTACCTTGCAAGACTTGCGGCCGTAGATTCAGGACGCTGTCTGACCTTCGGAGTTATGAAAGGCTACATTCGGGAGAAGGTGTGTTCACCTGCGACAAGTGCGAGAAAACTTTTGTACAGAAAAAACCTTTTACTCAATTCGCGACAAAGAGGTACTTGACACGCCACACGCAACGCCACAGCGCCGAGAAGAACTTACCTTGCGAGACGTGCGGTCGCAAGTTCCGAACAACATACGCTCTTCGGAGTCACATAAAACTGCATACAGGAGACGGGGTGTTCACCTGCGACAAATGCGAGAAAACCTTTGTGCAAAAAAACCTCTTGTTGAAGCACTATCAATATCACGCCAAGGAGTATTCgtgtttttgtgatttttgcGACAAAGGGTTCTACTGTAAAAGCCAGCTCATGGatcataaaaacacacacacaggggAGCGAACTTTCACCTGTAATATCtgtgacaaaagttactttgcTAGGAACAGCCTGAGCACCCACAAGAAAACACACACGGGTGTGAAGAccgtaaataaaaaatataaatgtgatgtCTGCGGGAAATTTGTTGTTAAACTGTCGCTCCATCTGCAGCGTCACAAAGGGGAACGTAACTTTCTGTGCCATCTTTGCGGCAAGAAGTTTCACGAGAAGCAGACTCTGTTACTTCACGGGCGAGTCCACACTGGAGAGAAACCCGAGATCTGCAGCTTGTGCGGCAAGGAGTTCGCCCGAATGACGACCCTGCGCGTTCACATGCGCACACATACAGGAGAGAAACTTTACGGCTGTAAAGATTGCGGCAAGAGGTTTACTCAGAGCAGCACGCTCACCATACATAGACGCTACCATACGGGGGAGAGACCGTACCACTGTGGTGTCTGCGAGAAGAAGTTTGTGTCCGTATCACTCCTTAACATGCATCAGAAAGCTCATTTTTAA
Protein Sequence: MNGFVLYAIKKYLLRHLPSYVLEKNLGCEIASSLSYHKKVHTGENKNPVKHECVVCCKFYVNLTIHLKRHTGERNFLCDLCGKKFRDNMIMPLHQRETGGVPPLQENFRLEDDSALPYAHPHRRETNGWVCPTCKRKFAIKKYLLRHLPSHVLERNLGCETCGRKFRKHFELRSHRRIHTGEGVYKCVQCGKSFVHKSILNSHLRYHAKEYSCFCKICGKGYHHKSQLDEHSNKHTGERSFPCDVCGKSYLLKRSLAYHKKVHTGENKNTVKHECGICGKLYVNISKHLYRHTGERNFLCDFCGKKFNNKESLLLHGRTHTGEKPEVCNVCGKMFARMTTLRVHMRTHTGERLYSCNDCGKKFTQSSTLTIHRRYHTGERPYHCAVHGEEADELPVIGFSPVARFTRRFVIYRVLAIGAGNETQPDILKKAQNKRETTIAALNRKNEVKSSKIIKKFKCKFCDKEFGKSTEQKDHTLTHKDNNNWVCPVCLKRFATKRNLLRHVPCYGAEKNLSCEVCGRKFRAPSALECHKKLHTGDDVFTCDKCDRVFNRKSSLRKHLKLHSKEYSCFCEFCDKGFYCKNQLSYHKNKHTGKRPLVCNICDKAYMVRSSLHAHMSMHRGEKQKRKKQECEVCGKFYANLSVHLKCHTGERNFLCNLCGTKFYEKQALLLHGRIHTGEKPEVCSLCGKMFARLTTLRVHMRTHTGEKLYNCNDCGKRFTQSSTLTIHKRYHTGERPYHCEKGFATKRSLTRHLQRNSHDTERNLPCKTCGRRFRTLSDLRSYERLHSGEGVFTCDKCEKTFVQKKPFTQFATKRYLTRHTQRHSAEKNLPCETCGRKFRTTYALRSHIKLHTGDGVFTCDKCEKTFVQKNLLLKHYQYHAKEYSCFCDFCDKGFYCKSQLMDHKNTHTGERTFTCNICDKSYFARNSLSTHKKTHTGVKTVNKKYKCDVCGKFVVKLSLHLQRHKGERNFLCHLCGKKFHEKQTLLLHGRVHTGEKPEICSLCGKEFARMTTLRVHMRTHTGEKLYGCKDCGKRFTQSSTLTIHRRYHTGERPYHCGVCEKKFVSVSLLNMHQKAHF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -