Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010000211.1:267698-274646[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00054 0.12 15.0 1.4 2 23 11 32 10 32 0.97

2 28 0.078 18 8.2 4.1 1 23 38 60 38 60 0.98

3 28 0.043 9.8 9.0 1.7 2 23 67 88 67 88 0.97

4 28 0.00025 0.056 16.1 3.3 1 23 94 116 94 116 0.98

5 28 0.027 6 9.7 4.7 1 23 127 149 127 149 0.96

6 28 0.00043 0.098 15.3 0.1 2 23 156 177 155 177 0.97

7 28 1.9e-07 4.3e-05 25.9 0.7 1 23 183 205 183 205 0.98

8 28 3e-05 0.0067 19.0 4.5 1 23 211 233 211 233 0.98

9 28 1.2e-06 0.00027 23.4 2.4 1 23 239 261 239 261 0.99

10 28 2.1e-05 0.0048 19.4 0.5 2 23 307 328 306 328 0.97

11 28 0.00043 0.097 15.3 4.9 1 23 333 355 333 355 0.97

12 28 0.81 1.8e+02 5.0 5.2 1 23 361 383 361 383 0.98

13 28 0.024 5.5 9.8 1.5 2 23 390 411 389 411 0.97

14 28 0.00036 0.08 15.6 5.6 1 23 417 439 417 439 0.98

15 28 0.36 82 6.1 6.4 1 23 450 472 450 472 0.97

16 28 0.0005 0.11 15.1 0.1 1 23 478 500 478 500 0.98

17 28 8.6e-07 0.00019 23.8 0.3 1 23 506 528 506 528 0.98

18 28 2.7e-07 6.1e-05 25.4 0.5 1 23 534 556 534 556 0.98

19 28 0.00022 0.049 16.3 4.5 2 20 609 627 608 630 0.94

20 28 0.0076 1.7 11.4 3.6 1 23 636 658 636 658 0.98

21 28 0.037 8.2 9.3 3.5 1 23 664 686 664 686 0.99

22 28 0.00059 0.13 14.9 0.8 2 23 693 714 692 714 0.96

23 28 0.0003 0.067 15.8 1.4 1 23 720 742 720 742 0.96

24 28 0.11 24 7.8 6.6 1 23 753 775 753 775 0.97

25 28 0.00022 0.05 16.2 0.0 1 23 781 803 781 803 0.98

26 28 1.1e-05 0.0025 20.3 0.1 1 23 809 831 809 831 0.97

27 28 7.9e-07 0.00018 23.9 2.3 3 23 839 859 837 859 0.97

28 28 2.5e-06 0.00055 22.4 1.2 1 23 865 887 865 887 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00054	0.12	15.0	1.4	2	23	11	32	10	32	0.97
2	28	0.078	18	8.2	4.1	1	23	38	60	38	60	0.98
3	28	0.043	9.8	9.0	1.7	2	23	67	88	67	88	0.97
4	28	0.00025	0.056	16.1	3.3	1	23	94	116	94	116	0.98
5	28	0.027	6	9.7	4.7	1	23	127	149	127	149	0.96
6	28	0.00043	0.098	15.3	0.1	2	23	156	177	155	177	0.97
7	28	1.9e-07	4.3e-05	25.9	0.7	1	23	183	205	183	205	0.98
8	28	3e-05	0.0067	19.0	4.5	1	23	211	233	211	233	0.98
9	28	1.2e-06	0.00027	23.4	2.4	1	23	239	261	239	261	0.99
10	28	2.1e-05	0.0048	19.4	0.5	2	23	307	328	306	328	0.97
11	28	0.00043	0.097	15.3	4.9	1	23	333	355	333	355	0.97
12	28	0.81	1.8e+02	5.0	5.2	1	23	361	383	361	383	0.98
13	28	0.024	5.5	9.8	1.5	2	23	390	411	389	411	0.97
14	28	0.00036	0.08	15.6	5.6	1	23	417	439	417	439	0.98
15	28	0.36	82	6.1	6.4	1	23	450	472	450	472	0.97
16	28	0.0005	0.11	15.1	0.1	1	23	478	500	478	500	0.98
17	28	8.6e-07	0.00019	23.8	0.3	1	23	506	528	506	528	0.98
18	28	2.7e-07	6.1e-05	25.4	0.5	1	23	534	556	534	556	0.98
19	28	0.00022	0.049	16.3	4.5	2	20	609	627	608	630	0.94
20	28	0.0076	1.7	11.4	3.6	1	23	636	658	636	658	0.98
21	28	0.037	8.2	9.3	3.5	1	23	664	686	664	686	0.99
22	28	0.00059	0.13	14.9	0.8	2	23	693	714	692	714	0.96
23	28	0.0003	0.067	15.8	1.4	1	23	720	742	720	742	0.96
24	28	0.11	24	7.8	6.6	1	23	753	775	753	775	0.97
25	28	0.00022	0.05	16.2	0.0	1	23	781	803	781	803	0.98
26	28	1.1e-05	0.0025	20.3	0.1	1	23	809	831	809	831	0.97
27	28	7.9e-07	0.00018	23.9	2.3	3	23	839	859	837	859	0.97
28	28	2.5e-06	0.00055	22.4	1.2	1	23	865	887	865	887	0.98

Sequence Information

Coding Sequence: ATGGAAAAGCACAACCCGGTCAACCAGATTAAATGTGACGTGTGTGACAAAACATGTCCATCTGGGTTTCAGCTGAAGCAACACTTAAAAATTCATGAGATGGTGAAGCTATACTCGTGCGATATGTGTTCGTATTCGAGCCACGTACAGGTGAACCTTCACGCTCATAGAAAGAGGCACTTCAACGATTACAAGGCGAGGTGCGACGTGTGTAACAGGGGTTTCTACTCCATGTGTTCGTACAAGTTACACCAGGCCGTCCATAAAGACGAGATGCCCTTCAGTTGCGACGTCTGCGGTAAGCTGTACAAGTTCAAACACTACCTAACCGACCACCTTCAGACGCACAAACCAGACTACGAGGAAACCGTCTTAAAGTTCAAGTGCCGGTATTGCGGCAAGGGTTTTCGCTACCGGGGGAAGTGCGAGGTCCACGAGAAGCGGCACCTGGGCCACAAAGAAGTGATGTGCGACATATGCGGCAAAGCGCTGAGCACGGTCCGCGAGCTGGGCCTCCACATGCGCCGTCATACCGGGGAGAAGCCATACGTCTGCAGCTATTGCGGGAAGACGTTCAGCCGCCTGAACTCGTTGACTCTCCACGTGCGTGTCCATACGGGCGAGCGACCGTACACCTGTGGCGAGTGCGGGAAGTCGTTCACGCAGCACTCGAGCTACGCTATCCACAAGCGCCACCATACCGGTGAGAGGCCTTACCGTTGTCTGATCTGTCAGAAAACCTTTGTGTCAAAGTCTCTGTTGAAGTACCACATGAAGTCTCACGAAGAACACAAGTCCCCAAGTAGTTTCTTTGTCGAACAATCTGAGGAAAAATCTAAACGCTCCAAGGTTAAGAGAAAAGCTTCAAACTCCATTTCTGGTCCTGTTAAGAGGAAGGTATCTAACAAAAAGTCAatcaaatgtaaaatttgtgGAAACGAGTACAAGCGAAACAGCACTCTGCAGAATCACTTGCTCGTCCACGGTCAGGATTCCCACGAGTGCGACCTTTGTAACAAACCGTTCAAGTCCGAGTGGCATCTAAAACAGCACAAGAAATACCACAGCAAAGCAAGACAGTACAAATGTGACATGTGTGGATACGAGACGTGCATTAAGGGTAACCTCCTCTGTCACAAAAGGAAACACTTAAAACATTACATTGTCAAGTGTGACGCGTGTAATAAAGGCTTCTATAGGACATGTGATTACCAAGaacatgttaaaatacacaCAGGCGAGAAACCTCACAGATGCAACAAGTGCGGAAAGTCGTTCCCCGGCAAACACCGATTGGCCAATCACAAGAAAACCCACGAACCGGACTACGAAGAGACAGTTCTTCGGTTCAGGTGCAAGTTTTGTAACAAAGGTTTCCCCGGTCAGAGTCTGTGCACGAGGCATGAGAAACACCACCTGGGTGTCAAGGAGTTCATCTGCGACGTTTGCGGCAAAGCCCTTAGCTCGGCGCATGCTATGAGTCTCCACCTTCGCATCCACACTGGGGAGAAACCGTTTGTTTGCGACTTCTGCGGTAAGATGTTTGGTCGGTCATCTGCTCTCACAATGCACTTACGTGTTCACACGGGTGAGCGTCCTTATGTGTGCAACGTGTGTGGGAAGGGGTTCACCCAGCCGTCAACGCTCACGATTCACAAGCGTTACCACACGGGCCAGAAACCGTTCACAAGTGATAACATTGTTGCTAAATCACCAGAGAAATCTAAACGCCATAACAAGAACTTTCTGATTTCGCCAAAGTCGCTATCTAGTCCTGTAGAACTTATGGAATTGGAGTGGGGGAGTGCAGAGAACCCCAAAtggaaatgtaaaatatgtgagAAAGTGTTCAAACACAAATGTTCGCTGAAGAACCACATGCCGCTTCATAACACCGAGGGCTCTTTCGAATGCGACATCTGCCATAAGCTTCTCAAATCAGATTATCAGTTGACTCGACATAAAAAGAACCACAGCCAATCGAAAGACTACAAATGCGGCATCTGCAGCTATGAGACATGTTCCAACAGTAAAATCGAGAGTCATAAGAGGAGACATATGAATGAGTACAAAGTGAAGTGTGAGCTGTGTAATAAAGGTTTCTACACCTCACGAGAGTTCCAGGAGCACACCATGCTCCACACAGGAGAAAGGCCCCACTCCTGCGAGGTCTGCGGTAAGTCCTACCCCAACAAATACCGGCTGGCGGACCACAAGAAGCTGCATGAGCCGAACTACGAGGAGATGTTCCTCAGGTTCAAGTGCCGGTTCTGCGACAAGGGCTTCCCACGGCAAAGCTCTTGCGTCCGTCATGAGAAGCACCACCTCGGCGTCCGGGAATACGCCTGCGATGTGTGTGGCAAGGCTCTCAGTTCGGGGCCTCTCTTAAAGCTTCACATGCGCATCCACACAGGGGAGAAACCGTTTGCCTGCGACGTGTGCGGTAAATCGTTTGGGCGCGTGTATGCCCTGACCATGCACTACCGCGTCCACACCGGCGAGCGCCCGTACGGTTGCTCTGAGTGCGGGAAGAGGTTCACGCAACACTCGAGTCTAACAATACACATGCGCTATCATACGGGGCAGAAGCCGTACGTGTGTAGCACGTGCACGAGGTCATTCGTTTCCAAAACTTTGCTGACTGCCCACATGAAGAGTCACGCGCAATAA
Protein Sequence: MEKHNPVNQIKCDVCDKTCPSGFQLKQHLKIHEMVKLYSCDMCSYSSHVQVNLHAHRKRHFNDYKARCDVCNRGFYSMCSYKLHQAVHKDEMPFSCDVCGKLYKFKHYLTDHLQTHKPDYEETVLKFKCRYCGKGFRYRGKCEVHEKRHLGHKEVMCDICGKALSTVRELGLHMRRHTGEKPYVCSYCGKTFSRLNSLTLHVRVHTGERPYTCGECGKSFTQHSSYAIHKRHHTGERPYRCLICQKTFVSKSLLKYHMKSHEEHKSPSSFFVEQSEEKSKRSKVKRKASNSISGPVKRKVSNKKSIKCKICGNEYKRNSTLQNHLLVHGQDSHECDLCNKPFKSEWHLKQHKKYHSKARQYKCDMCGYETCIKGNLLCHKRKHLKHYIVKCDACNKGFYRTCDYQEHVKIHTGEKPHRCNKCGKSFPGKHRLANHKKTHEPDYEETVLRFRCKFCNKGFPGQSLCTRHEKHHLGVKEFICDVCGKALSSAHAMSLHLRIHTGEKPFVCDFCGKMFGRSSALTMHLRVHTGERPYVCNVCGKGFTQPSTLTIHKRYHTGQKPFTSDNIVAKSPEKSKRHNKNFLISPKSLSSPVELMELEWGSAENPKWKCKICEKVFKHKCSLKNHMPLHNTEGSFECDICHKLLKSDYQLTRHKKNHSQSKDYKCGICSYETCSNSKIESHKRRHMNEYKVKCELCNKGFYTSREFQEHTMLHTGERPHSCEVCGKSYPNKYRLADHKKLHEPNYEEMFLRFKCRFCDKGFPRQSSCVRHEKHHLGVREYACDVCGKALSSGPLLKLHMRIHTGEKPFACDVCGKSFGRVYALTMHYRVHTGERPYGCSECGKRFTQHSSLTIHMRYHTGQKPYVCSTCTRSFVSKTLLTAHMKSHAQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -