Tbar005165.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Timema bartmani
Gene Symbol
-
Assembly
GCA_902151455.1
Location
CABFWB010000211.1:323675-333256[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 1.3e-05 0.003 20.1 2.3 1 23 79 101 79 101 0.97
2 35 0.00019 0.043 16.4 3.1 1 23 107 129 107 129 0.97
3 35 0.0012 0.26 14.0 1.6 1 23 135 157 135 157 0.98
4 35 0.014 3.2 10.6 5.1 1 23 163 185 163 185 0.96
5 35 0.0038 0.85 12.4 0.4 1 23 191 213 191 213 0.95
6 35 0.0011 0.25 14.0 6.1 1 23 222 245 222 245 0.98
7 35 7.7e-05 0.017 17.7 0.9 2 23 254 275 253 275 0.96
8 35 3.1e-07 6.9e-05 25.2 0.4 2 23 282 303 281 303 0.97
9 35 4.7e-07 0.00011 24.7 1.8 1 23 309 332 309 332 0.97
10 35 0.005 1.1 12.0 3.3 2 23 404 425 403 425 0.97
11 35 2.8e-05 0.0062 19.1 2.2 1 23 431 453 431 453 0.98
12 35 4.5e-05 0.01 18.4 2.2 1 23 459 481 459 481 0.98
13 35 4.8e-05 0.011 18.3 2.0 1 23 487 509 487 509 0.96
14 35 0.0021 0.47 13.2 0.4 1 23 515 537 515 537 0.95
15 35 0.00063 0.14 14.8 3.9 1 23 547 569 547 569 0.98
16 35 1.5e-05 0.0033 19.9 0.2 1 23 577 599 577 599 0.98
17 35 0.11 24 7.8 0.1 2 12 606 616 605 619 0.88
18 35 5.9e-05 0.013 18.0 1.1 2 23 685 706 684 706 0.96
19 35 0.0031 0.7 12.6 5.3 1 23 712 734 712 734 0.98
20 35 0.061 14 8.6 4.7 1 23 740 762 740 762 0.98
21 35 0.00012 0.026 17.1 1.5 2 23 769 790 768 791 0.94
22 35 0.0016 0.35 13.6 0.8 1 23 797 819 797 819 0.95
23 35 4.8e-06 0.0011 21.5 0.2 1 23 829 851 829 851 0.98
24 35 2.7e-05 0.0061 19.1 1.9 1 23 858 880 858 880 0.98
25 35 2.7e-05 0.006 19.1 1.3 1 23 886 908 886 908 0.98
26 35 0.75 1.7e+02 5.1 0.1 1 13 914 926 914 927 0.89
27 35 0.079 18 8.2 4.1 2 23 958 979 957 979 0.97
28 35 0.0021 0.47 13.2 2.6 1 23 985 1007 985 1007 0.95
29 35 0.0024 0.53 13.0 1.6 1 23 1013 1035 1013 1035 0.98
30 35 0.035 7.9 9.3 2.8 1 23 1041 1063 1041 1063 0.95
31 35 0.00013 0.03 16.9 0.7 1 23 1069 1091 1069 1091 0.95
32 35 8.8e-05 0.02 17.5 0.4 2 23 1102 1123 1102 1123 0.96
33 35 3.8e-06 0.00085 21.8 0.3 1 23 1130 1152 1130 1152 0.98
34 35 1.2e-05 0.0026 20.3 2.4 1 23 1158 1180 1158 1180 0.97
35 35 4e-05 0.0091 18.6 1.3 1 23 1186 1208 1186 1208 0.97

Sequence Information

Coding Sequence
ATGTTGGTGCCACAGTCTTCAACTGTAGAAAATACTCTACTACCCCAGTTGCCAAAAGAAGAAGATATGTCGATACAGCAGTTgtcagaagaagaagaagaagaaaatatgaTTCTACCACACATGCTCGAGGATGATAGTGATATGTACCGTGTCGATATGGAGCAAGAGTCAATTTTCACTTCCATTGCTAGTCCTAAAGAAAAGAGTGCAATGTCTCACAAACCCGTGATTCATAAGTGCAAAATTTGCGGTAGAGAGTTCAACAGGAAAAACGGTCTAACAAGACACAAGGCAGTGCACAGCGCTATTCGTCCTTACGAGTGCCCTACCTGTGACAAACGGTTCAAGAGAAAATGTGAACTGGACCTCCACAAAGTAACACACACCGATGCTAAACAGTATGCCTGTGATATATGCAGCCTGGTGTGCAATCGAAAAGGTAATCTAGACTCGCACCGCAAGAGACATTTCAACGCCTTTACTCATTTCTGTAGCGTGTGCACCAAGGGGTTCTACGACAGTTTCACCATGAAAAGCCACAAGAGGACACACAACAAACTGAAACCTTTCCTTTGTGATCTATGCGGCTGGAAATTCACGACCGGCGCTCAGATGGCGAAACACAAGCTCAAACACGCCCCCGGTTACAAGTCCGAGCTGTTCAGGTGTGACGACTGTGATAAATGTTGCCTGACAAAGTCGAATTTGATGTCGCACGTCAGACGGAGACACGCCGCCGAGGTGGTACCTCAGTGTATTTGCGACATTTGCGGTAAATCGTTATCCTCTAAGGAGTACCTCGTACTTCACAGACGCATACATACGGGAGAAAAACCACTGTCTTGCGATGTGTGCGGGAAGGCATTCACTCAAGCCAAGTATCTTAAAGTTCATCAGCGCACTCACACAGGAGAGAGACCATTTTCTTGCAACGTCTGTGAGAAACGATTTACCCAGCGAAGCAGTTTAAATGCACACATGAAATCATACCACAAGTGCACTAAACTGCTTAACCTAAATAACCGTGCCTTCCACGATGACTGTTTTGTTCCTTCCAAAGAGATAACACCAAAAACAGCCAAGTCTTCCATTGATCATATAAGTTTGGTTCATGTCAAAGAAGAGACCATTGAAAAACTCACCACAGATTCAACGTTAAAGTGTGAAACTTATCTGCCGGACTTGTTGCCTCAGATTTCCACAAATAAATGTGacatttgtaataaaacatatcACAAGAAATCCGATCTTGACTatcataaaataacacacagtGATGTTCGGCCATTCGAGTGCTCCGTTTGTAACAAAAGATTCAAGAGAAAATATGAAGTGACTGTTCACAAGTTAACACACACTGGTGACCTGAAATATTCCTGCGATATCTGTAACTTTGTGTGTAACCGTAAAGGGAATCTTGAGGCTCATCGTAAGAGACACATGAATGAGTTTGACCATTTCTGTGATATATGCGGTAAAGGATTCTACAACAATTTCAACTTGCAAGGACACAAAAGAGTGCATATCGGGTTGAAACCTTTCCTCTGTGATCTGTGCGGTTTGGGATTTTCTTACAAAGCAGCCATGAAAAAACATAAACTTAGTCACAATCCCGGATACAAGCCCAAACCAAAACACGAGTGCGACATTTGCGGCAAATGTTTCCTGTCAAAGTCGAGGCTATCGGTGCACATTAAGCGGCATTATGGGGAGGCGTCACCCGGGTTTATTTGTGACTTTTGTGGCAAAGCGGTGTCGTCGAAAGACTCGTTGGTGACCCATCAGCGCATACATACTGGGGAGAAGCCCCTCTCTTGTGATATTTGCGGGAAGGCGTTCAGCCATGTTAAGTCGTCGAaagatatttatcttaattGTGTGAGAAGCTCAGCCGACTGCTCTGGCATCTCCCAAGAAATAGGGGCTTCTAAATTATCAGTTTCACAAGAAACGGACATCGTCAAATTTCTATTGATCCCAAACAAAAGGGACTCCTCTAAGTTAATATCAGTAGATAATGTTGTTTCTCTCAATTCTTGCCAATCTCTCATCTGTGATGTGTGCCATAAAGAGTATGTTTCAATCGACTCTCTACGTAGGCACATGAAGAGGCACAGAGAGGATCGACCCTTCACGTGCAACGTATGCACGAAATGTTTCAAATGCAAGAGTGAACTGGTCGCCCACCAGACGGTGCACAACGGAAACTTCAAGTTTCACTGCGAGTTTTGTCGGTACGTGTCGAACCGTAAGACCAACCTAGTGTTACACCGAAAAAGGCATCTGAAGCAGTATTCCCTCAGCTGCGACATATGTAGAAAAGAGTTCTATTCGAAAGGGGACCTTAGGGAACATATTAGCAGACACCATTCCGGTATCAAACCTTTCCTGTGCGATATCTGCGGTTGGGGGTTCATCAGCCACTACGCCATGACGCAGCACAAAATGAAACATGAACCGGACTATAAACCAGCGCACAAGTTTGTGTGTGACTCGTGCGGTAAAGGTTTCATCTCCAGAGGGAACTTGAAGGTGCACATAAAGCAGCACACTGGGGGCTCTCCGGAATACATCTGCGACTTTTGTGGCAAGATCCTGTCGACTCGGGACTCGCTGAAGCATCACCGGCGAGTACACACTGGAGAGAAACCTTTTGTTTGTTCGGTGTGTGGCAAAGCTTTCAGTGCTAAGAAATATCTGGACGTTCACCACAGGACGCATACAGGGGAGCGACCGTACTCGTGTGAGCTTTGTGGTAAGAGGTCCTCAAATCCCGCTATTCTGTTAAAATATACCGCTGTCTCTTACCCTGGACTGTCTCAAGAAATACAACTAAAGGACCCAATATTTAGACACACAAATGTTTGGAAATGTGACATATGCAATAAAGAGTACAGTTGTGAAAGCGCTCTCCACCAACACACGAAGCGACACATAGAAGACAGACCGTTTATGTGCGCAAAGTGTGACAAAAGGTTTAAACGCCAGTGCGAACTTGACGTCCACAACTCTGTCCACAGCggtgttttcaaatatttttgtgatcTTTGCAACTATGTTTCAAACCGCAAGGGGAATTTGGATTCTCATCGCAAACGGCATTTCAACAAGTTTACACACAGTTGCGATACCTGTCTGAAAGGGTTCCACTCTAAATCAGCGCTGCAAGAACACAGCGCCAGTCACACTGGTGTGAAACCGTTTCTGTGCGATATTTGCGGGTGGGGTTTCTCAAACAGATATTCGATgacaaaacataatatgaagCACAATCCTTCTTACAAACCAGACTACAAAAACAAGTGCGCTGCCTGCGGGAAGGGGTTTGTGTCTCGAGAGAACTTGTCCATGCACATGAAGCGGCACGCGGGCGAGTCGCCAGATTACGTGTGCGACATTTGCGGTAAGGTCGTGACGACTCGCCAATCGCTCAAATTGCACCGGCGAATACACACAGGAGAAAAGCCTTTTGCCTGTTCAGTGTGTAGTAAGACGTTCAGTGACATTAGCTATCTCAAGGTCCATCACCGGACTCACACGGGCGAGCGGCCGTTTGCTTGTGACTTGTGCGAGAAACGTTTCACCCAGAGGTCCTCTCTTCTTATTCACAAGAAATCTCATCGACTTCACCTTTAA
Protein Sequence
MLVPQSSTVENTLLPQLPKEEDMSIQQLSEEEEEENMILPHMLEDDSDMYRVDMEQESIFTSIASPKEKSAMSHKPVIHKCKICGREFNRKNGLTRHKAVHSAIRPYECPTCDKRFKRKCELDLHKVTHTDAKQYACDICSLVCNRKGNLDSHRKRHFNAFTHFCSVCTKGFYDSFTMKSHKRTHNKLKPFLCDLCGWKFTTGAQMAKHKLKHAPGYKSELFRCDDCDKCCLTKSNLMSHVRRRHAAEVVPQCICDICGKSLSSKEYLVLHRRIHTGEKPLSCDVCGKAFTQAKYLKVHQRTHTGERPFSCNVCEKRFTQRSSLNAHMKSYHKCTKLLNLNNRAFHDDCFVPSKEITPKTAKSSIDHISLVHVKEETIEKLTTDSTLKCETYLPDLLPQISTNKCDICNKTYHKKSDLDYHKITHSDVRPFECSVCNKRFKRKYEVTVHKLTHTGDLKYSCDICNFVCNRKGNLEAHRKRHMNEFDHFCDICGKGFYNNFNLQGHKRVHIGLKPFLCDLCGLGFSYKAAMKKHKLSHNPGYKPKPKHECDICGKCFLSKSRLSVHIKRHYGEASPGFICDFCGKAVSSKDSLVTHQRIHTGEKPLSCDICGKAFSHVKSSKDIYLNCVRSSADCSGISQEIGASKLSVSQETDIVKFLLIPNKRDSSKLISVDNVVSLNSCQSLICDVCHKEYVSIDSLRRHMKRHREDRPFTCNVCTKCFKCKSELVAHQTVHNGNFKFHCEFCRYVSNRKTNLVLHRKRHLKQYSLSCDICRKEFYSKGDLREHISRHHSGIKPFLCDICGWGFISHYAMTQHKMKHEPDYKPAHKFVCDSCGKGFISRGNLKVHIKQHTGGSPEYICDFCGKILSTRDSLKHHRRVHTGEKPFVCSVCGKAFSAKKYLDVHHRTHTGERPYSCELCGKRSSNPAILLKYTAVSYPGLSQEIQLKDPIFRHTNVWKCDICNKEYSCESALHQHTKRHIEDRPFMCAKCDKRFKRQCELDVHNSVHSGVFKYFCDLCNYVSNRKGNLDSHRKRHFNKFTHSCDTCLKGFHSKSALQEHSASHTGVKPFLCDICGWGFSNRYSMTKHNMKHNPSYKPDYKNKCAACGKGFVSRENLSMHMKRHAGESPDYVCDICGKVVTTRQSLKLHRRIHTGEKPFACSVCSKTFSDISYLKVHHRTHTGERPFACDLCEKRFTQRSSLLIHKKSHRLHL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-