Tbar011489.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000634.1:90799-91833[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-08 2.4e-05 26.1 0.0 3 35 13 46 11 52 0.92
Sequence Information
- Coding Sequence
- atggaaaagaagaaaaagaagggAAAATGGGACCAAACAAGTTTACAAACTGCGATTACTAAGGTTTTGACTAAAGAACTTACTTTGAGAGAAGCTTCGTTGCGCTACAACATTCCAAAAAGTACTCTGCATGATAAAATATCAGCATTGAACCGTGGGGAAGAAGTGACGTTGCAACCAAAGATCGGTAGATTCACTAACACATTTTCACCCGAGTATGAACGAGTTTTAGTGGACCACGTCAAAGATTTGTCAAATAGATGTTTGCCGCAGATGAAAaaggagtttttgaaattagctTTCGACTTGGCTGAATCTATGAAGATCCCTCATCGCTTTAACAAAGAGAAAGGTACAGcaggaaaacatttttactatgatTTTATGCAGAGACATCCTGACATATCGCTGCGATCACCAGAGTCAACAAGCATGATGCGGGCCGTAGGGTTTAACAAACCACAAGTAGATCTCTTTTATGACAATCTTGAAAGACTGATAACACTGCACAAATTTCCACCTTCCAACATTTACAACTGCGATGAAACTGGAGTAAGCTGTGTGCATAAGCATCAAAAAGTTCTTGCTCCAAAGGCTGTCCGTCAAGTAGGAAAGCTCACTTCTGCTGAGAGGGGCAAAAATATAACAGTCTTGTTTTGTATGAGCGCTAACGGCCACTTCATACCGCCATTTTTCGTGTTTCCAAGGCAAAGAATGAATGATAGACTCATGATTAATGCTCCGGCCGAAAGTGTGGATGTGGCCCAGCCAAAAGGCTGGATGAATAGTGATTTCTTCCTACGCTGGTTGCAGCTGTTTGTAAAACACTCTCACCCAACTAAAGAGAGCCCTGTGCTGCTTCTACTGGATGGCCACTGCAGCCACAAGACACTGGCGGTCATAATTTTTTGTCGCGAAAACCACATTCATTTGATAAGCTCACCGCCACATACCAAGCACAAGCTCCAACCATTAGATAGAACATTCATGAAACCGTTTAAAATGCCTATAACCAACGATGCGACATGTGGATGA
- Protein Sequence
- MEKKKKKGKWDQTSLQTAITKVLTKELTLREASLRYNIPKSTLHDKISALNRGEEVTLQPKIGRFTNTFSPEYERVLVDHVKDLSNRCLPQMKKEFLKLAFDLAESMKIPHRFNKEKGTAGKHFYYDFMQRHPDISLRSPESTSMMRAVGFNKPQVDLFYDNLERLITLHKFPPSNIYNCDETGVSCVHKHQKVLAPKAVRQVGKLTSAERGKNITVLFCMSANGHFIPPFFVFPRQRMNDRLMINAPAESVDVAQPKGWMNSDFFLRWLQLFVKHSHPTKESPVLLLLDGHCSHKTLAVIIFCRENHIHLISSPPHTKHKLQPLDRTFMKPFKMPITNDATCG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444673; iTF_01444687; iTF_00423714; iTF_00923563; iTF_00172753; iTF_00770294; iTF_00282237; iTF_00423710; iTF_01199326; iTF_01449502; iTF_01449503; iTF_00282240;
- 90% Identity
- iTF_01449503;
- 80% Identity
- iTF_01444687;