Tbar024636.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010001965.1:101804-102610[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-08 1.5e-05 26.8 0.0 2 44 16 58 15 59 0.87 2 2 9.5 7.3e+03 -1.0 0.1 12 22 135 146 129 148 0.55
Sequence Information
- Coding Sequence
- ATGCCACGAGAATACAAAAGGAAAAGTAACCGAGCTTCATGGTCTCAAGATGACCTTGAGAAGGCCATTGATGCTGTAACAAAAGAGGGAAAAGGTGTACTCGCTGCTTGCAGGGAATATAACATTCCCTCAAGAACACTACGCagaagaattttaaataacaatagaGTGAAACGAGGACTAGGCCCTTCTGGATGTTTGGGATTAGAAGTGGAGAAGAAGCTCGTTACGCATATTCAGAAGCTACAGACTTCTGGTTTTGCCCCAAATACGAAAACAGTTCGAATTCTTGCTTTCAAGTTAGCGCAGAGGCTAGGTTTGAAACATAGGTTTAATACAAACAAGGAGCAGGCTGGATATGATTGGTTTTTATCGTTTATGGCTCGGAATCCAGAGCTCAGTGTGAGGAAAGCGGAAGGAATATCACTAGCCAGAGCGCAAGGCATGTGCAAAGAAGAAAGTGAAAAATACTTTAACTTATTGAAGGACTTACTTaccaaacataaattaatgaataaacctgggaacatttataatattgacgAAACGGGATTGCAGTTGAATAACAAACCTGGGAACGTAGTAGCAATTAAAGGGTCAAAGGACGTTCACGTTGTCACATCAGGAGAGAAAGGCGAGACAATTAGTGTTATTGCATGCTGCAATGCGGAAGGAAATTTTTTACCTCCTTATTCCATTTTCAAAGGTGTAAACAAGAAAGCAGAGTTTGAAGACGGGATGCCTCCTGGTTCTACTGTCacaatgtcaaaaaaaatcgtCATATGTAACATCAGAAATATTTCTTGA
- Protein Sequence
- MPREYKRKSNRASWSQDDLEKAIDAVTKEGKGVLAACREYNIPSRTLRRRILNNNRVKRGLGPSGCLGLEVEKKLVTHIQKLQTSGFAPNTKTVRILAFKLAQRLGLKHRFNTNKEQAGYDWFLSFMARNPELSVRKAEGISLARAQGMCKEESEKYFNLLKDLLTKHKLMNKPGNIYNIDETGLQLNNKPGNVVAIKGSKDVHVVTSGEKGETISVIACCNAEGNFLPPYSIFKGVNKKAEFEDGMPPGSTVTMSKKIVICNIRNIS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -