Tbar036818.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010004140.1:1862-2317[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-10 2.9e-07 32.3 0.0 2 38 4 40 3 44 0.92 2 2 5.5 4.3e+03 -0.3 0.0 4 14 78 88 76 89 0.87
Sequence Information
- Coding Sequence
- ATGTGGGACAAGGAGACTATGGCCGAGGCTGTGACTGCTGGtcgagaaaataaaatgggttATTTGAGAGCCTCGAAGATTTATGGTGTTCCCAAAGGAACGATTGAGAGGTATGCCAAGGATTCACGAAGTATTGGCGAGTTATTGAATGTTAAGTTGGGAAAGAAACCTGTACACCTACAAATGGATGAACGTTTCTTTGGGCTCAGGAGGAGCGATATTAAAAGGCTCGCGTTTCAACTTGCTATCCAAAATGTGGTGAGCCATCCATTCTGCCTGGGAAAGGAAGCAGCTGGCAAGAAGTGGCTCCATGGATTTTGGGTAGGCATCCCCAACTTTCTGTGA
- Protein Sequence
- MWDKETMAEAVTAGRENKMGYLRASKIYGVPKGTIERYAKDSRSIGELLNVKLGKKPVHLQMDERFFGLRRSDIKRLAFQLAIQNVVSHPFCLGKEAAGKKWLHGFWVGIPNFL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -