Tbar026156.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- -
- Assembly
- GCA_902151455.1
- Location
- CABFWB010002178.1:103951-104556[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-11 4.5e-08 34.8 0.2 3 38 14 49 12 53 0.92
Sequence Information
- Coding Sequence
- ATGCCGCCTACAAAGGAGAAGAGAAAGGTGTGGAACAAGGAGGCTATGGCCGAGGCTGTGACTGCTGttcgagaaaataaaatgggttATTTGAGAGCTTCAAAGATTTATGGTGTTTCCAAAGAAACGATTGAGAAGTATGCCAAGGATTCACGAAGTATTGGCGAGCTATTGAATGTTAAATTGGGAAAGAAATCTGTAAACCCACAAGTACTGGGGAAAAAAATGGTACAATATTGTGTACAGATGGATGAGCGTTTCTTTGGGCTCAGGAGGAGCGATAATAAAAGGCTCGCGTTTCAACTTGCTATCCAAAATGTACTGAGCCATCCATTCTGCCTGGGAAAGGAATCAGCTGGCAAGAAATGGCTCCGTGGTTTAGGTAGGCATCCCCAACTTTCTGTGAGAACACCGGAAGTAGTGTCATCTGCAAGGGCGAATGGATTTTCTCACGAAAACGTGGATTCTTTCTttgacatttatgaaaaacaattcGAAAAAGTTCAATCTCACCGTGTCTTCAATGTTGACGAGACTGGGGTCACTGTGGtccaaaataagaaaatgaaagttatttttctaagaGGGAAAAACTCTGTCAGTTGA
- Protein Sequence
- MPPTKEKRKVWNKEAMAEAVTAVRENKMGYLRASKIYGVSKETIEKYAKDSRSIGELLNVKLGKKSVNPQVLGKKMVQYCVQMDERFFGLRRSDNKRLAFQLAIQNVLSHPFCLGKESAGKKWLRGLGRHPQLSVRTPEVVSSARANGFSHENVDSFFDIYEKQFEKVQSHRVFNVDETGVTVVQNKKMKVIFLRGKNSVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450426; iTF_01444638;
- 90% Identity
- -
- 80% Identity
- -