Tbar009730.1
Basic Information
- Insect
- Timema bartmani
- Gene Symbol
- ttk
- Assembly
- GCA_902151455.1
- Location
- CABFWB010000501.1:142341-158295[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-15 3e-12 48.2 0.0 2 44 396 439 395 440 0.95 2 2 0.0049 3.8 9.5 0.0 4 35 536 567 535 570 0.87
Sequence Information
- Coding Sequence
- ATGGCTGTCCAGCAATTTTGTTTGCGGTGGAATAACCATCAGCCAAACTTTGTCTCTGTGTTCACAAGTTTGTTGAACAATGAGTCTCTGGTGGATGTAACTTTAGCCGCAGAAGGAAGACATCTTCAGGCTCATAGAGTTGTGCTCTCTGCCTGTAGTACATATTTTCAGACTCTGTTTACCGTCAATCCTTGCCAACACCCAATTGTTATATTGAAAGATGTCAAATACAATGATCTTAAAACAATGGTTGATTTCATGTACTATGGGGAGGTGAATGTGTCCCAAGAACAGCTGCCAGCAATTTTAAAGACTGCGGAGATGCTGAAGATAAAAGGTCTGGCAGAAATGCCAGAGTATAGCAGCGGTGGTTCTCTGCACATGTCCAAGTCCCTGAGTGTGTCCTCAGATAAGGGGGAACTGCCGACAACTGCGGCAGACAACTGGAGCAGCACAGAGATGACCAGGCGCAGTGCCTCTCCTATGTCTCCTGCAATGCGTAGGAAGAGGCTTCGCAAGTCTTCCACAGGCTCGGGGTCTGGGTCTACAGCTGAGCGCACATCAGAGGAGCTCCCTAGTGAGATCACACTGATCCCCTCTCCCGCGATGGTCAAACCGGAGCCACTCCCCTCCATGCTGGACGGGAATGGTCGAGGCAGTGACAGCTCCCATCCTGGTTCCTTGAGGAACAGCACGCAAGAGCCCAGCACTGACTCTGAGCCCAGGGAGGGTTCCCAAGACAGTGTGGAGGACGACCATATAACCATGATGGGTCACTCCCAAGACAGTAATGTGGGCAGCATGGACACATCTTTGTCAGATACTGGGCCAGGCCCTTCTACCTCCATGGGCTCACAACACCAACAGAACCTTGCGTCACAAGGCATCCAGTGGACCCTGCTAGAGCACCACGGTTATCCTCGATTCGCACTGTCATCCTGCCAGGCTAATCTGTCGGTGCAAGCATCATCAGCATTCGACCCCTCGCACCCCTTGCCATCAAGATCACAGTACCCTGCTCACAACCAAATAGATCCCATACCCTCATGCATCGTTGCTGGCCAATATTCCTCCACCAGTCCTTGTCCTAGCTCATGCTCCAGTCCTTGCACTAGTCCCTTAAAGAGTGCCATCAATCCAGCAGGACAGCAGGTTCGGCGAAAACGCAGTACAAATCCTCAGGCAGATGAGAACTTTGTTCGAGCACTAGATGCTGTGAGGTTTGGTGGCATCGGTTTCTGCAAGGCGGCGCGGATGTTTGGCGTTAATAACCGTACTTTGTGGCTAGAATACAAGAAGCGCGGCTATCCGGTGACTCGGCCCAGCTTGAAATCTCGTGTGAAACAAGAAATCTCGTCATCCACAGGGGGTGCAAACAACACTAACCAACAGATGGCACCCTCACAGTCAAACATGGCTCCTCCCTCTCAACCAATGGGTCCGCCCCCTGCTGTTGTTAACATGAGTGGTTTTCTAGACAGTAGGCCTAATGAGTTTGTTCATCCGCAGAGCCCTATACCTCCTCGACACAGCCCCACTAGCAAAGTTAAGATCATAAACACAGGAGGGAGGAAACTCATCATCGGCAGCAGGGAAGTGGTGGATAGCATGCTGAGGGTGATTCACGCTGTTTGTTTGGACATGATATCCATAAACAAAGCTGCCCTCTGTTTCCAAGTGTCTTGTGCCACTCTGTGGAGACCCAATGCTTCGCAGAAAATCTGGAGCGCTGGGGGAttgattgaacccaggacttctCTATCTGTGGataggaactctgaccacttgATCACAGAGGCAATCTTTTTTCCTCACATGTTAAAAAAAGATGTGACCTTCTGA
- Protein Sequence
- MAVQQFCLRWNNHQPNFVSVFTSLLNNESLVDVTLAAEGRHLQAHRVVLSACSTYFQTLFTVNPCQHPIVILKDVKYNDLKTMVDFMYYGEVNVSQEQLPAILKTAEMLKIKGLAEMPEYSSGGSLHMSKSLSVSSDKGELPTTAADNWSSTEMTRRSASPMSPAMRRKRLRKSSTGSGSGSTAERTSEELPSEITLIPSPAMVKPEPLPSMLDGNGRGSDSSHPGSLRNSTQEPSTDSEPREGSQDSVEDDHITMMGHSQDSNVGSMDTSLSDTGPGPSTSMGSQHQQNLASQGIQWTLLEHHGYPRFALSSCQANLSVQASSAFDPSHPLPSRSQYPAHNQIDPIPSCIVAGQYSSTSPCPSSCSSPCTSPLKSAINPAGQQVRRKRSTNPQADENFVRALDAVRFGGIGFCKAARMFGVNNRTLWLEYKKRGYPVTRPSLKSRVKQEISSSTGGANNTNQQMAPSQSNMAPPSQPMGPPPAVVNMSGFLDSRPNEFVHPQSPIPPRHSPTSKVKIINTGGRKLIIGSREVVDSMLRVIHAVCLDMISINKAALCFQVSCATLWRPNASQKIWSAGGLIEPRTSLSVDRNSDHLITEAIFFPHMLKKDVTF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444876;
- 90% Identity
- iTF_01445760;
- 80% Identity
- iTF_01444876;