Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00024 0.18 13.7 0.1 2 36 2 36 1 43 0.86

2 4 3e-10 2.3e-07 32.6 0.0 3 39 53 88 51 92 0.92

3 4 0.39 3e+02 3.4 0.0 23 39 129 145 113 151 0.79

4 4 2.5e-10 1.9e-07 32.9 0.0 5 37 172 204 170 210 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00024	0.18	13.7	0.1	2	36	2	36	1	43	0.86
2	4	3e-10	2.3e-07	32.6	0.0	3	39	53	88	51	92	0.92
3	4	0.39	3e+02	3.4	0.0	23	39	129	145	113	151	0.79
4	4	2.5e-10	1.9e-07	32.9	0.0	5	37	172	204	170	210	0.89

Coding Sequence: NNTGAGGAGAGCATTGCGCAGGCCTTGGAGGACCTCAAGTCTGGCCGCACGCTCGTGGAGACAGCCATCGCACACAATGTCCCCCGCTCCACGCTTTATGTGCGGGCACGTACACAGCACGTGTCACTGGCCTATACGAGACAGGAGCACTCTGGAGAGATCATAAAGGCGGCCGTGCAGGCCGTTGTAGATGGCGCGAGCCTACAGAAAGCGTCAGAGAAGCACAAGATTCCCAAAACAGTACTGTGGCGGCGTGTACAAAAGGAGCTGGGTAGGTACGGTATCTCCCACCGGCGTGGTGCCGGTACCAGGACGCCGTCCAGGTCTGAGAAGAGGCTAGCTGCTATCCAGGCGCTCGAGCAGGGTGACACACTCACCACGGTCTCCAAACAGTTCCAGATCCCCAAGACGACCTTGTTTCGTGAAAAGACTCGGCTGGTGGAAGCGGGCAGACTCCCCTGGTCCTGTCTGCGGAAGAGAGACCCAGAGTACGACGGGAAGCACCAGCGGAGACTAAAGGACGCAGTGACTGCATGCATGGAGGGCAAGATGTCCCAGGCTACAGCCTCTATGACTTACCAGGTCCCGAAGACAACGATATGGCGACGCCTGCACAAGGGTTCTGTCAAAGGGTCCCAGGAGTCTCGAGAGGGAGAGGAAGTGGATGACCCCGAGTCCAAGCCAGCCGAGGGCGACGAGATGGAGGATCAGCCCGAGTACACTCTCGATTTGACGAACCAGGTCCTGGAGAGTGATGAGTTTGGCGAGACTTCGCTCATCATTCTTTCCACACGAGGCAGTGGAGAAGAAATTGACCTGCAGGAAGGGAGTACTATCATAGTGAGCACATGTGAAATATGGAAGGGGACTCGGATTGGGAAACTGTTCCCTCACAACAAAGCTTGGGGAAGGGACCTGAGACAAGTAGCAGGGTTAGTGAAGGTAGTTCAGTGGGATGTAGCAGTGCCGATCACCTTTCGCAATGCTGTGTTCTCGACCGATTATTTGCAGTTTCGTTTGGAGCCCTCACTTTAG
Protein Sequence: XEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIQALEQGDTLTTVSKQFQIPKTTLFREKTRLVEAGRLPWSCLRKRDPEYDGKHQRRLKDAVTACMEGKMSQATASMTYQVPKTTIWRRLHKGSVKGSQESREGEEVDDPESKPAEGDEMEDQPEYTLDLTNQVLESDEFGETSLIILSTRGSGEEIDLQEGSTIIVSTCEIWKGTRIGKLFPHNKAWGRDLRQVAGLVKVVQWDVAVPITFRNAVFSTDYLQFRLEPSL*

Sequence clustering based on sequence similarity using MMseqs2