Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.023 18 7.4 0.1 26 39 1 14 1 17 0.87

2 4 2.9e-12 2.2e-09 39.1 0.0 1 34 28 61 28 69 0.92

3 4 7.3e-17 5.6e-14 53.8 0.0 1 45 83 128 83 128 0.96

4 4 3.2e-15 2.4e-12 48.5 0.1 1 43 135 178 135 180 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.023	18	7.4	0.1	26	39	1	14	1	17	0.87
2	4	2.9e-12	2.2e-09	39.1	0.0	1	34	28	61	28	69	0.92
3	4	7.3e-17	5.6e-14	53.8	0.0	1	45	83	128	83	128	0.96
4	4	3.2e-15	2.4e-12	48.5	0.1	1	43	135	178	135	180	0.95

Coding Sequence: TATCACATTCCTTCCCCCACTTTGTGGAAACGAGCTCGACGCGTGGGTGTTGACATCCCCAAATTAAAGATCAAGTCTTGGACTGAGGATAATCTCAACAGCGCATTGGGGGCCTTAAGATCTGGCGCCATGTCCGCTAACAAGGCTAGCAAAGCTTATGGTATACCCAGCAGTACTCTGTTTAAAAATGCACACCTTAAAGGAATACGTTTGACCACTCCATTTAATGCTGCACCTACCACTTGGACACAAGATGACCTTGAACAAGCCTTAGTAGCTATCAGTTCAGGACAAACTTCTGTTCAACACGCTTCTACAGAATATGGCATTCCTAGAGGGACATTATATGGCCGTTGCAAGCGAGAAGGTATTAAACTTTCTCGGAGTAACGTTGCACTCTGGTCAGAAGAATCAATGGGCGAAGCATTAGAAGCTGTGAGAGTTGGACAGATGAGCATCAAAGACGCAGCAAGTCACTACAAGCTTCCGTATTCTTCCTTATATGGTAGActtaaaaggaacaaataccaGGTGGAATTGGCCCCGTCATCTGGATGA
Protein Sequence: YHIPSPTLWKRARRVGVDIPKLKIKSWTEDNLNSALGALRSGAMSANKASKAYGIPSSTLFKNAHLKGIRLTTPFNAAPTTWTQDDLEQALVAISSGQTSVQHASTEYGIPRGTLYGRCKREGIKLSRSNVALWSEESMGEALEAVRVGQMSIKDAASHYKLPYSSLYGRLKRNKYQVELAPSSG*

Sequence clustering based on sequence similarity using MMseqs2