Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.03 3.7e+02 3.4 0.0 21 34 8 21 6 30 0.82

2 6 0.00027 3.3 10.0 0.0 21 42 34 56 23 61 0.82

3 6 0.0061 76 5.6 0.0 22 42 48 69 47 73 0.82

4 6 0.0064 80 5.5 0.0 22 42 61 82 58 86 0.74

5 6 0.0012 15 7.8 0.0 22 42 74 95 72 95 0.87

6 6 0.00019 2.3 10.5 0.0 21 42 86 108 84 111 0.88

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.03	3.7e+02	3.4	21	34	8	21	6	30	0.82
2	6	0.00027	3.3	10.0	21	42	34	56	23	61	0.82
3	6	0.0061	76	5.6	22	42	48	69	47	73	0.82
4	6	0.0064	80	5.5	22	42	61	82	58	86	0.74
5	6	0.0012	15	7.8	22	42	74	95	72	95	0.87
6	6	0.00019	2.3	10.5	21	42	86	108	84	111	0.88

Coding Sequence: ATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTTTCGGAAGATGTTCTCGGAAGATGCCCTCAGAGGATGTTCTCAGAGGATGTTCTCGGAAGATGTTCTCGGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCGGAAGATGTTCTCGGAAGATGTCCTCAGAGGATGCTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTCGGAGGATGTTCTCGGAAGATGTTCTCAGAGGATGTTCTCAGAGGATGTTCTN
Protein Sequence: MFSEDVLRGCSQRMFSEDVLRGCFRKMFSEDALRGCSQRMFSEDVLGGCSQRMFSEDVLRGCSRKMFSEDVLRGCSQRMFSEDVLRGCSQRMFSEDVLGRCSQRMFSEDVL

Sequence clustering based on sequence similarity using MMseqs2