Basic Information

Insect: Timandra comae
Gene Symbol: -
Assembly: GCA_958496195.1
Location: OY292364.1:10899691-10912919[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.026 2.4 9.4 2.3 1 23 612 634 612 634 0.99

2 11 4.2 3.8e+02 2.5 5.7 1 23 641 664 641 664 0.91

3 11 4.2 3.8e+02 2.5 1.2 2 23 669 691 668 691 0.92

4 11 0.0018 0.16 13.1 3.6 1 23 696 719 696 719 0.97

5 11 0.019 1.7 9.9 0.2 3 23 728 749 727 749 0.95

6 11 0.029 2.6 9.3 0.8 3 22 761 780 760 784 0.93

7 11 1.3 1.1e+02 4.1 0.2 3 23 790 811 790 811 0.92

8 11 0.08 7.1 7.9 0.6 1 17 845 861 845 862 0.90

9 11 0.0086 0.77 10.9 0.6 1 23 1153 1175 1153 1175 0.97

10 11 3.6e-06 0.00032 21.6 0.5 2 23 1180 1201 1180 1201 0.98

11 11 0.0083 0.74 11.0 7.0 1 23 1207 1230 1207 1230 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.026	2.4	9.4	2.3	1	23	612	634	612	634	0.99
2	11	4.2	3.8e+02	2.5	5.7	1	23	641	664	641	664	0.91
3	11	4.2	3.8e+02	2.5	1.2	2	23	669	691	668	691	0.92
4	11	0.0018	0.16	13.1	3.6	1	23	696	719	696	719	0.97
5	11	0.019	1.7	9.9	0.2	3	23	728	749	727	749	0.95
6	11	0.029	2.6	9.3	0.8	3	22	761	780	760	784	0.93
7	11	1.3	1.1e+02	4.1	0.2	3	23	790	811	790	811	0.92
8	11	0.08	7.1	7.9	0.6	1	17	845	861	845	862	0.90
9	11	0.0086	0.77	10.9	0.6	1	23	1153	1175	1153	1175	0.97
10	11	3.6e-06	0.00032	21.6	0.5	2	23	1180	1201	1180	1201	0.98
11	11	0.0083	0.74	11.0	7.0	1	23	1207	1230	1207	1230	0.96

Sequence Information

Coding Sequence: ATGAACGTACCCTATCAAGAGTTTGAAGAGTCCATCGCAAAGTCTAAACCTAAAGTAGTTCAAAAATCAAAACCCTCTCACTTTGATTTGATAGAACGACTGAAAGATATTTATAAGGCTTGCACTTGTAAGGTTTGCGAATGTCTAGTAGGGAAATCAATGAACACCACTAATGTAACTGTGTGTAACTGTAAACCTTGTGAATGCGTCGACTGCACATACTATAAGAACTATAAGTTGCCATTAAAAAGTCATAACTCCCAGCATCCACACTCAGGGTGCCCGTGTGTGCGATGTTCCCGTACATCCTGCAAAGGTATTGCGAAACCTACTAAAAAGGGGCTCGGAGAGTGTGATTGTAACCCAAATGAAAAAGAAACCAACAGCACCAACTTTTGTAATTGTATCCCGTGCCAATGTATCACATGTAAAGCAATGTCTGCTAGACTGGGGACTTTGGTGGTAGCTCCTGTAGGAGAAAACACTCACAATATGTGTGATTGTTCGCCCTGCATGTGCTCTGGATGCGTACCGAGCGGCAGACCTGTGGGCGACCGCCAGATGCGCGAAATGTCGACGAGTGTGAACAGACATCAACGGTGTCAATGTGAATCATGCAATAACGAAGCTTGTATACCAGACGATAACGAGTCGTGCTGGTGTGCCAGACACAGCAAGGTCATGAGCAAACCCGTGCAGCAACCGAACAGTTTGGACTACGACATACatGACATTAATATGGTGAAGAAAACGGTGATGCCATTGTTTCGTAATATAGAGATGGAAATTAAAGATGCGATATGTTCTATATCACTACAGCCTGCTAATATTGCAGCTAACATTCAAAATACTGTGAGACAAGAAAATAAAGCTTTGGAAAATTTACACCAAGAAGTGAAAAAACTTCTGCAGATGCCGCTTTTGcaagtttacaaaaaacagattaataatgtttgtttgtcagAGgaCATGGCAAACTATGAACTGCAGAAAAGTATATCTGTTGAAAATGCATTAACAACACCAATCAAGGCCACTGAATACAATTTCAGAAAAGTGGAACagGATTTCAAATACAACATAGATGAATTGAAAGTGCATTTTCTTAACGTGAGAAGACTATCGGACCACACCGTTGTGATCAAATGGGTAGTTCCTAAAAACTTGAAGTATGTTGAAGGATATGAGCTGCTAATTGACGGGAGAGCAGTGCAGAAGATACTGGGTCCTTCTAAGAGTATGGCTATTGTGACGTGTTTGCCCCAAAGTGAGATATTATTGTTAACAGTGCGTACTGTCACCCATTCTAGTTGTCCGTCTGGCAAGgAAACCAAGGAACCTGGTCGCATTTGTAATGAATGCATTAATTTTCTGTACAAGTATGAAAAGTTCAGAGATCAATGTGCACAAGCATCTATGAAAGTTGCGGATGGAGATATAGTtcagATTACCTCTCCAAATCAAGAAAACTCTGATGAGGCTAGCCAGTCGGAGAATGAGTCTGTAAAAGTTGAGTATTACAGTGATAATGACAGCGACCAGGACGGCCATTACACTGACAATAGTAGCCAGGAAAtacttgaatataattttaatactaaaaaaGATGATAGTGGCAAAGAAGATAGTGGAAATGAAGATAATGATAATGGAGATAGTGGCAAGGAAGATATTGGCGTCAACTATAATGATAAAATAGATATAACTATTGAAATGAATAATGAAAACCTTAATATGTTTTCCGAGTATTTAACGATAGTGGAAGTGGAAGCAGATGAAGCTAGAAAGCAACTTTTGGCGCGGACAAAGTCGGCTAATTATATGAAGTCTCCGTTCAAATGTGACTTTTGTTTTCGAGGGTATCCGCTGAAGAATACTTTTGAGAATCATATCAAGAAACATAGTTCTgCAAGTGGCAAGTACGAATGTGAGATTTGCCAGCTGCGGTTCAACACGGAGCAGTCGTGTTACAAACACTACCAGGAATGCCATCGGTACAAAATCACGTGTAAACTGTGCCCGTACTTCGGCTATAGTTTAAAACAAGCAAGAAAACACATAGAACACCAACATCAAGGAAAGAAATATGAATGTAACGAATGTTGCAAAGTGTTCAGCACGCCCGCGTGCCTGCAGTCCCACAAGCGACTCGAACATGTGGTGAACTGGCGCGAGGAGGCGTGTGCCTTCTGCGGGCTAACGTTCGTCACCGCCGCCGGACTGCATCTACATCGCATCAAGTTACATAAGCAGgAAAAGAACGAAAAGAAAGGTCCGTTTTGTAAGGAATGCAAGATTCAATTTTCAACGATGGAAGCGTGGCAGAGACATCTCAAGATATCGTCCAAGCATAACACATATCACGGGTGCGCGCAGTGCGGCGAGTCGTTCGGCAGCGCCGCCGAGAGCGACAGCCACAAGCGGACGCGCCATTACAGGCACGAGGCGGGATGGGTGGCGGATAAGCGCTTGTACCGGCGGCACATGGCGCGGCCGGAGGCGGCGGGGCGCGAGCCGGCTGACAAGAAGCCCTACGTGTGCGAGCACTGCGGGCTGGCTTTCCGGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGGGGGGGGACAGGGACATCGTCAGTTGTGTGAGGCCGCCGCGTTCGCGGCGCGGGGCGAGGGGGGCtggcccgcgccgcgcgcgtaCGGGGCTGTCGTCCTCCCCTCTACaCTGAAGTGCTTCCTGCGGTACCACCTGGCGAAGCACTCGGGCGAGCGGCCGTACCGCTGCGACCAGTGCCCGATGACGTTCCAGCAGCCGCAGCAGTACTACGGCCACCGCGCCATGCACCGCCACAAGCCGCAGTGCACCATCTGCGGCCGCGTCTACAAGTACCTCTACGGGCTCAGCAAGCACATGCGGATGCATCTCGGCATCCGTCCCCATCAGTGTACATTCTGCGACAAGACGTTTATTAACAAATGTGATGTCAAACTGCATATTAAACACGTTCACGAGAAACAGCCGTGGCCCAAACGGGTTCGGAAGAGGCCTAAGAGCGATAAGGCTAGACGCAGAACCAAGAAAGTTCTACAAGAAGAAACTACAGTCGATGACCCATCTATTATTAAAACTGAGGAGTtatcaaactaa
Protein Sequence: MNVPYQEFEESIAKSKPKVVQKSKPSHFDLIERLKDIYKACTCKVCECLVGKSMNTTNVTVCNCKPCECVDCTYYKNYKLPLKSHNSQHPHSGCPCVRCSRTSCKGIAKPTKKGLGECDCNPNEKETNSTNFCNCIPCQCITCKAMSARLGTLVVAPVGENTHNMCDCSPCMCSGCVPSGRPVGDRQMREMSTSVNRHQRCQCESCNNEACIPDDNESCWCARHSKVMSKPVQQPNSLDYDIHDINMVKKTVMPLFRNIEMEIKDAICSISLQPANIAANIQNTVRQENKALENLHQEVKKLLQMPLLQVYKKQINNVCLSEDMANYELQKSISVENALTTPIKATEYNFRKVEQDFKYNIDELKVHFLNVRRLSDHTVVIKWVVPKNLKYVEGYELLIDGRAVQKILGPSKSMAIVTCLPQSEILLLTVRTVTHSSCPSGKETKEPGRICNECINFLYKYEKFRDQCAQASMKVADGDIVQITSPNQENSDEASQSENESVKVEYYSDNDSDQDGHYTDNSSQEILEYNFNTKKDDSGKEDSGNEDNDNGDSGKEDIGVNYNDKIDITIEMNNENLNMFSEYLTIVEVEADEARKQLLARTKSANYMKSPFKCDFCFRGYPLKNTFENHIKKHSSASGKYECEICQLRFNTEQSCYKHYQECHRYKITCKLCPYFGYSLKQARKHIEHQHQGKKYECNECCKVFSTPACLQSHKRLEHVVNWREEACAFCGLTFVTAAGLHLHRIKLHKQEKNEKKGPFCKECKIQFSTMEAWQRHLKISSKHNTYHGCAQCGESFGSAAESDSHKRTRHYRHEAGWVADKRLYRRHMARPEAAGREPADKKPYVCEHCGLAFRGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGGGGQGHRQLCEAAAFAARGEGGWPAPRAYGAVVLPSTLKCFLRYHLAKHSGERPYRCDQCPMTFQQPQQYYGHRAMHRHKPQCTICGRVYKYLYGLSKHMRMHLGIRPHQCTFCDKTFINKCDVKLHIKHVHEKQPWPKRVRKRPKSDKARRRTKKVLQEETTVDDPSIIKTEELSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -