Basic Information

Insect: Timandra comae
Gene Symbol: -
Assembly: GCA_958496195.1
Location: OY292355.1:8838551-8845391[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.39 35 5.7 1.8 1 23 52 75 52 75 0.97

2 20 0.0066 0.6 11.3 3.8 1 23 82 105 82 105 0.97

3 20 0.0025 0.22 12.6 0.8 2 23 207 228 206 228 0.97

4 20 2 1.8e+02 3.5 1.4 1 23 234 256 234 257 0.94

5 20 0.19 17 6.7 3.4 2 22 492 512 491 512 0.95

6 20 4.6 4.1e+02 2.4 0.4 1 20 609 628 609 631 0.70

7 20 0.13 11 7.3 0.8 2 23 762 783 761 783 0.96

8 20 0.38 34 5.8 3.5 3 23 861 881 859 881 0.96

9 20 0.029 2.6 9.3 0.5 1 23 889 911 889 911 0.97

10 20 0.17 16 6.8 3.3 1 23 945 967 945 967 0.95

11 20 0.00022 0.02 15.9 4.0 1 23 975 997 975 997 0.99

12 20 0.21 19 6.6 2.1 1 23 1080 1102 1080 1102 0.98

13 20 1.7 1.6e+02 3.7 1.0 1 23 1157 1179 1157 1179 0.94

14 20 0.0056 0.5 11.5 0.1 2 23 1186 1207 1185 1207 0.97

15 20 0.044 3.9 8.7 1.1 1 21 1275 1295 1275 1297 0.90

16 20 0.012 1.1 10.5 1.1 1 23 1303 1325 1303 1325 0.96

17 20 0.0062 0.56 11.4 2.6 1 23 1415 1437 1415 1437 0.97

18 20 0.00016 0.014 16.4 1.4 1 23 1443 1465 1443 1465 0.99

19 20 1.7 1.6e+02 3.7 2.0 1 23 1555 1577 1555 1577 0.96

20 20 0.013 1.2 10.3 3.9 1 23 1589 1611 1589 1611 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.39	35	5.7	1.8	1	23	52	75	52	75	0.97
2	20	0.0066	0.6	11.3	3.8	1	23	82	105	82	105	0.97
3	20	0.0025	0.22	12.6	0.8	2	23	207	228	206	228	0.97
4	20	2	1.8e+02	3.5	1.4	1	23	234	256	234	257	0.94
5	20	0.19	17	6.7	3.4	2	22	492	512	491	512	0.95
6	20	4.6	4.1e+02	2.4	0.4	1	20	609	628	609	631	0.70
7	20	0.13	11	7.3	0.8	2	23	762	783	761	783	0.96
8	20	0.38	34	5.8	3.5	3	23	861	881	859	881	0.96
9	20	0.029	2.6	9.3	0.5	1	23	889	911	889	911	0.97
10	20	0.17	16	6.8	3.3	1	23	945	967	945	967	0.95
11	20	0.00022	0.02	15.9	4.0	1	23	975	997	975	997	0.99
12	20	0.21	19	6.6	2.1	1	23	1080	1102	1080	1102	0.98
13	20	1.7	1.6e+02	3.7	1.0	1	23	1157	1179	1157	1179	0.94
14	20	0.0056	0.5	11.5	0.1	2	23	1186	1207	1185	1207	0.97
15	20	0.044	3.9	8.7	1.1	1	21	1275	1295	1275	1297	0.90
16	20	0.012	1.1	10.5	1.1	1	23	1303	1325	1303	1325	0.96
17	20	0.0062	0.56	11.4	2.6	1	23	1415	1437	1415	1437	0.97
18	20	0.00016	0.014	16.4	1.4	1	23	1443	1465	1443	1465	0.99
19	20	1.7	1.6e+02	3.7	2.0	1	23	1555	1577	1555	1577	0.96
20	20	0.013	1.2	10.3	3.9	1	23	1589	1611	1589	1611	0.98

Sequence Information

Coding Sequence: ATGTTACACATATCCTCGCTGAGCGCGCAATTCGGCGAGTTCAGTGCTGACGGACGACAACCTATCTCGCACAACATAAACAACGTCTCCGAGGCGTCGTCTTCGGATACAGCGGAAGAATTTGAACTACCGATttgcaaaaataaaagaaattacaATTGCAAGAAGTGCAATTTTCATACACAAAATCCGCGTGCTTATCTTTTGCACGTGCGTGTAGTACATTTCGgagtatttaatatattcgAATGCCAGCATTGTTTATATGCCTCGGCACATAGTTACCAACTGACACGACATTTAAAGAGGGTTCACGGAGAATCTCCTTCGTCGTCTACCACGATGGAAACGGAGCCGGTCGCTTTGGATAACGCGACCGATAACATTGAAAGAATGGAAGATTTGCTCGAAGAAATAGAAGAATGTGATGACACAACAAACGAGGCCGACGGTCGCGACGACCACACAGAGGGTGTCGACGACGCCTCCGCCGACACCCGGGGTGTCAACAAGCCCAAAGGCAAAGGAAAATTTTTCTCGTGCGATAAATGTCACTACGTCACCCACATCAAAGCGAGATACACGAAGCACGTCAAGTACCACTCGATGCCGATGATCAAGTGTACGATATGCGAGTTTCGCACACCTTACAAATGGAATTTGGACCGTCACATGAAGAACCACGGAGGGACGGGTAGTTTCGTGTGTTCAAAGTGTTCGTTCACGGCGGACATCAAGCAGAGTTTGACTGTTCACGAAATGAATCACCACATGCCGCCTATTGGGCATTGGGTCGCAAATTGTCGACGCCGCAACCGGGTGGGCGCAAGCGACTTGGCGTTCGTGGAGCCGACGCTTCCCAAGGAGGAGGAAGGGAGCGGCGACGGCGACTCGCGCTCCTCGTACTCGACCTCGGACGCAATGGGCCTGCAGAATGCGGAAAGAGATATAGTGAGCTGCAACAGTGATTCCAATGACGCAGCTCATTCACATAACTCGACAAATAGAGATGATACTCAAGACTCCCACGGCCGACATTCCCCTAACTCAGGAAACGAAGATTCCAAGTCACAAAGGAGTAAAAAAGCACCCAGACCCATCCCACAACTAATACCCCTAAACTCATCGACACCAAACGCAGGAAAAAGTTCACCAGGCGAACCACCAGCGAAGAAATTCAAAGATTCCACTGGCGCTGAAGTcaacaaattcgaaaatctACCAGACGATATCACTCTAATACCCGTTCACAACGCACCTCCAAAAGATTCTTCAAGAAAGAAAAATGAATCGTTCTTCGATAAATTGAAAGAAAGACTCTTAACAGAAACAGGCGCAGAAGGATCTCTTAAATGCAAAAGTTGTGGCTTCGAAAGTAAATGTCTGTCGGAACATTCAGTACACGAGAAGAACTGTACGTCACAATCTAATCGAGTTGTGATGAACACTTCGCATCCGAGTATGGGATCAACTCGATGCCAAAACTGTAGGCACAGGTGTAAATCGAGTGCCGATTTATACATACACATGCAAACATGTGGGAAGAAAGAGACAACTAACGTCACAGACATTAAACAAGAAAAAGGCACAGAGGCCAGTACATCTAAACAAGAAAAGGAATCAGAGCCACATCCAATGGAAAATGTTGTTTTCGTATGGAACAACATTGGCCAAGaagaaaacaaattcaataGACCTCTCGATATAAACATTAATGATGATGCAACTCTACCAGAAATATCCCGAAACTACGACATTGAGATTGTTGATGAAAACGAAAGTATGAATTTGTCACCAAATAGTTTGAGTCTTGGCAAAAACGTATATAAATGTCCAGATTGCAAATTCTGGGCAGCTACAGCTTCTCGGTTCCACGTTCATATTGTGGGACATTTGAATAAGAAGCCGTTCGAATGCTCTCTCTGTAAATATAAGTCTAATTGGCGATGGGATATAACGAAACATATAAAGTTGAAGTCAGCACGAGATCCTGAGCACAATGACGCTAAAGTACTGATGACAGATGAAACTGGTAGAAGGAACTACAGCAAGTACAACAAGTTCTTAGCTGTGGctgttttaaatgaaaacgGAGATAACGAGTTTCACTACATAGACCCTAATACAGAAGTCGACGCATCTATGGAGGTGGATGAATCATTCAATGATGGTGATATGAACGCTTCGTATGAGATGCAACCGCTTAACCTGCAAACACAATCGAATGAGATGAAATATGATTCAAATGAAGGTGAAGGAAAGAAATCTAAAAAGACCCTGTGGAAATGCAAAAAGTGtaactataaGGATTCGTCGAAAGACGCACTACTTGACCACGTGAGACAACATTCCAAAGGTGAAGTAAGTTCGGATGACCCTTCACAAAAGAAAGCGGACAGTACTCCTGATCCGGCCGATCTGGCATATCGCTGTGGACACTGTAACCAACTATCTAACTGGAAACACGTTATACagAGACACTGCCGCTTGAAGCATGATGGAGTCATCAAGGTAATTACCACTGTGAAGCCCAAGCCCGAGCCAGCCCAAACACAGGTCAGCGACAGCTACAGCGATCATTGTACCAAATGTCCTTTCAAAACTAACGACAAGAAACAGATGACGGAACATTTGCAACAACATCAACCTTCAGCACAATCTATATTCAAATGCTACTTCTGTCCATACTTCGTAAAGGACGAACAAGACTTGATCCAACATCTTCTTCTACACGGCATAACAGACCCCGAAGATTACATAGCCAAAGCAATGGGCTGCAAGTCTCCTTTACCAGACCAAGTGATACAAGAAACTGTTAGTTTCACGAAACGCCACAAGTGCACGGAATGTCCTTACGAAACCAACAGCAAGTCCCAATACTTGTACCATGAACAATTCCACAAACTACCGGCTGATACTCCTTACAAATGTCCGGAATGTAACTACAGCGTCTCGAAGAGGCATCTCCTTCATCAGCATCTGAGAGTACACGGTATATTTGCTAAGAAACACGAAACTGAGGCTGATCTAGAACTAGCGTCCACGTCATACCTTTACAAGTCTGAACTAAAACACGAGGACATTGAAGATATTCCATACGTGTGGGTCTCCGCAAGGAACGAGTTCCACAAAATGTACAAGTGCCGCTATTGTTCTTATGTCAATTCGCAGAAGTGCAAGATTCCCAACCATGAAAAGATACATTGTCTGGTATTCGAGAACAGTGATGTGATTatatataaatgtttagaaTGTAAATTTACTTGTGATAATGCTGGCAGACTGGCGGAACATTCCAAAAGGCACGGTTTACTTTACGGCCGTATCTATAGTGTCGTTGAAGACAATGTCCCAGATGAAGATCAAATCGCTAAACTTCGCAAAGTTATTGAATTGGAAAAGAATACAATAGCCGATGAGTTAGTTAAAGAGGAAAACGCTTCAGAAGAAACTGAAACGAAGAATCTGTACTTCTGTCAAAAATGTCCCGCAAGGTATTTCACAGAGAGCGAAATCAAAGGTCATGAAAAGTTCCATGATTTAACGCTTGATAACAAATGTAAATATTGCGAATTCTCGGTAGCAGAAGAAAGTGATTTAATAGCACATATGACTGTGCATTCTGACGAATATCACATTAGAACAAATATGCTTAATTTCGTACACAACTCACACTCACTATACAAAGAACCTCGCTTAGAAATCATTCGTGAATCTGAATCATCGGAAAAAACTTGGAAAATTTCAACCTCTGTCGCTAGTGAAATCATCGAACAGAGTCAGACTAAGAAATCGTCTGAAACAAAGCATACGccaaaacaatatttctgCAAAGAATGTCCGGCGAAATTTTTCAAGAGTTCTGCACTAACATACCACTCGGGTTTACATGGCGGGGAAGGTGAACATAAATGCAAGAAATGTAGTTATGCCGTCAAAAATGTTGGTAATTTAGCTAAACATGAACTGTTACATGAGAACGAAAATAAACCACCCAACTGTGACTACGAATCGGGCGATGATAtggattataaaaatattccgtTATCTGGCACAGACCTATTCCAACGCAAGACTGAAGCTCAAAAAAGAGTGTTAACAGACAAAGATAAACTGGTGAAGCCGAATGATCATTTCCCACCAGTGCTCCAAGCGGATCCACAGTTTGGATATCTAATGCACGGTAATCCCGAATTTATCTACCCCACTTACTTGAAAAATGGGCGGCAAAAGGAAAAACGATACAAATGCCACAAGTGCCCTTCCGCTTTTGAGAAACgagaacaatataaaattcactTATCACTTCATGGGTCAAAGCAACGATACAAGTGTGAGCTATGTGATTATTCAGTTAAATATTACGCTAATTATGTGCAGCATATGAGAAAGCATCAAATGAACGATGAAGCTCAAGCTGAAAGGAAAAAGGGGAGCAACTTCACTGAGACCGAAACTCAAGACATCAAACCAGAAGAAGGGGCAGACAACATTAAGTTGGCTATTAAAACGATGCCTAGAGGAGTCCCTAAAAGTGACTTCCAACAATTTTCAGTGAGGGATCAACAGACACTACGACTTCTTCAACGTAGGCGGACGATCGTCAATGGTGGCAAGGACACGAACACCTTTGAAAGTTCACCAACGAAAGAACGCAAACTGCACATGTGTTTATTATGCCCATATACCAACCAACGACAAGATGCGTTGAGTAACCATTACAAGAGACACGACGACACAGACATTTTCAACAAGTTTGGAAATCATAAATGCTCATTTTGTGACTTGGTCGTTGTTCAGTCTCACTTCCTACGGGAACATTTGAAGACTCATTTTAATTACCACAAAACATTGACACCTGAATGTTTTGTTGCTAATGAAGACGTTAGTTTTACGATTACTAAACTGGATGGGGAAAGCGAACCGATTGATCTCAAATTAGATGTGAAAAGCAAAATTGTACCGTgcaatgaaaagaaaatattcgttaaaattaaaacaggtGAATTAGTAGCAGATAGTTAG
Protein Sequence: MLHISSLSAQFGEFSADGRQPISHNINNVSEASSSDTAEEFELPICKNKRNYNCKKCNFHTQNPRAYLLHVRVVHFGVFNIFECQHCLYASAHSYQLTRHLKRVHGESPSSSTTMETEPVALDNATDNIERMEDLLEEIEECDDTTNEADGRDDHTEGVDDASADTRGVNKPKGKGKFFSCDKCHYVTHIKARYTKHVKYHSMPMIKCTICEFRTPYKWNLDRHMKNHGGTGSFVCSKCSFTADIKQSLTVHEMNHHMPPIGHWVANCRRRNRVGASDLAFVEPTLPKEEEGSGDGDSRSSYSTSDAMGLQNAERDIVSCNSDSNDAAHSHNSTNRDDTQDSHGRHSPNSGNEDSKSQRSKKAPRPIPQLIPLNSSTPNAGKSSPGEPPAKKFKDSTGAEVNKFENLPDDITLIPVHNAPPKDSSRKKNESFFDKLKERLLTETGAEGSLKCKSCGFESKCLSEHSVHEKNCTSQSNRVVMNTSHPSMGSTRCQNCRHRCKSSADLYIHMQTCGKKETTNVTDIKQEKGTEASTSKQEKESEPHPMENVVFVWNNIGQEENKFNRPLDININDDATLPEISRNYDIEIVDENESMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVAVLNENGDNEFHYIDPNTEVDASMEVDESFNDGDMNASYEMQPLNLQTQSNEMKYDSNEGEGKKSKKTLWKCKKCNYKDSSKDALLDHVRQHSKGEVSSDDPSQKKADSTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKPEPAQTQVSDSYSDHCTKCPFKTNDKKQMTEHLQQHQPSAQSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYIAKAMGCKSPLPDQVIQETVSFTKRHKCTECPYETNSKSQYLYHEQFHKLPADTPYKCPECNYSVSKRHLLHQHLRVHGIFAKKHETEADLELASTSYLYKSELKHEDIEDIPYVWVSARNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCLVFENSDVIIYKCLECKFTCDNAGRLAEHSKRHGLLYGRIYSVVEDNVPDEDQIAKLRKVIELEKNTIADELVKEENASEETETKNLYFCQKCPARYFTESEIKGHEKFHDLTLDNKCKYCEFSVAEESDLIAHMTVHSDEYHIRTNMLNFVHNSHSLYKEPRLEIIRESESSEKTWKISTSVASEIIEQSQTKKSSETKHTPKQYFCKECPAKFFKSSALTYHSGLHGGEGEHKCKKCSYAVKNVGNLAKHELLHENENKPPNCDYESGDDMDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGSNFTETETQDIKPEEGADNIKLAIKTMPRGVPKSDFQQFSVRDQQTLRLLQRRRTIVNGGKDTNTFESSPTKERKLHMCLLCPYTNQRQDALSNHYKRHDDTDIFNKFGNHKCSFCDLVVVQSHFLREHLKTHFNYHKTLTPECFVANEDVSFTITKLDGESEPIDLKLDVKSKIVPCNEKKIFVKIKTGELVADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00407219;
90% Identity: -
80% Identity: -