Tcom024141.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292382.1:2490623-2494650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 0.12 13.5 1.6 2 23 127 149 126 149 0.93 2 10 0.0018 0.16 13.1 5.7 1 23 177 200 177 200 0.97 3 10 0.00079 0.071 14.2 0.9 1 23 206 228 206 228 0.97 4 10 0.54 48 5.3 0.1 2 21 228 247 227 248 0.93 5 10 0.14 13 7.1 2.3 1 21 256 276 256 278 0.91 6 10 0.056 5 8.4 3.4 2 23 284 306 283 306 0.92 7 10 4.1 3.7e+02 2.5 0.1 1 19 326 344 326 344 0.87 8 10 4.1 3.7e+02 2.5 0.9 1 20 363 382 363 385 0.90 9 10 0.0001 0.0093 17.0 6.1 1 23 472 495 472 495 0.97 10 10 0.039 3.5 8.9 0.4 2 21 502 521 501 522 0.92
Sequence Information
- Coding Sequence
- atgAATATTACTTGCAATGGGTTTGATATTGTGGAAAAAGAAAAGTGTAAAGAGACGGAAGGCGTTGATATACGAAGCTCGAAGGATTGCGAAAACGGGCTATTGGAAATTGGGGTCTCCTTCCGTGGATTTAAGAAGGTACCACTTGTTAAGCTACCTAAAATCGACATATCACCGTTCTTACAAAGAACTGGAAGGCCTAAATCTCGTATAAAACCGGGCAATGGCTTTAAAGTAAGCGAAGTTCACAGAGGACGGCTCTCTCAGTTATGCAAAGTGAAACTTGTTAGAGATGATTTGAATAAACTTAAATCTTTATACAATCGGAACATTACTAACTCCGACACGGAAGCCTCAAGTTCCTCAGAAATGGTAATAACTTGTAGAATATGTAAGAAGTCTTACAATAATGTCAAGAAGCTGCAGAACCATCTGCAGGACAAACATATAATATTGACAGCGAACGGCAAGCCTCAGAAAAGGGTATCATTCTCCGATCACGTCATTATTCATGAGGTTAAGGAGTATCATAAGTGTCGTAAGTGTACAAAGATATTTGAAGAATATAAGTCTTTAAAGCAACACATGAGACAGAAGCATAAAAAGCGCAAATGCTACATCTGTAATTATTGTACCAGAAGCTTTGCGGACCGTACAATATTCAAAGTTCATATTAAACTACACTGCGACATCTGCGGTGAATTACTgccaaacaaaactaaatacttaatacatagACGAGAAGtttgtagaatatttaaatactacaaATGTAAGTTATGCGATGATACATTCTTCAATATAATGCACTTAAAAGATCACGGCTACGATCACATTGACCCATGCTTAGTGTGTGACGATTGCAAAGACCGATTTAAGCAGAAATGCTTGCTCGCTCatcatatttcatttttacataacaaaaacaaacctgACTCATTATATAATATGCTCAAAGTGGGTAACGAACGGGTATACTTATGTAACTTTTGTGACGAAACGTCGGTAGAAAAAGAATTGATAGAAAAACATTGTGAAAATCTTCCCGATTTGTCCAATAAAGTTATTACTGATTACAAGGACTATTATTTCTGTGACCAATGCATGGAAAAGTTTGAGACAGAAAAGGAAATGCTGCAACATAAATGGACCCATTTTCTgtcgaaaaataaaattttagcgaacatgttaaatataaccaataataataagcagaaaaaaataaaaacaacatacaaTATCAACGAAGAAATACCAGAATACATGAAACCAGTAATTGTACTGGAAAAACTGAAAGAGCCTCAAAAAACAGATGAAGTTAACATTTTATCGGACAATATGACATTAGTTAATGTTAGCGATTTGAAACATCCTCTCGTTGACAAGAAGAGTAAAAAGACATTGTTTTCAAAACATAAATGTGAGAACTGCGGAAGATATTTCTCCAGTAACTATTGTTTGAAACGTCACTACGCGACACTGCACAGCGATTTCGACCAGCTACGCTGTAAGGTATGTGAGGAGACATTTGTATGGCCATCCTTATTAAGGACACATAAGTGTATAAGACTCAATCTACCTGAAATGCCTTTCGAAGACGCACGCCCCGAAATACagttcgaaaatcaaaatccgGGTGATGTAGAAGATTTTCCGATGATACAAGATGATTTACCAATGATAGACGATGATGGTGATGATTACATGAATTCGGTTGATTTCGAAATACCAGCGCCTATAGTTGAATTGACAGAGTATGACGATGCAGTTGCTAATagtgaaaataatttgaattgtgAACAGTTACAGAATTTAGGTTATAAAGTTGTTATGCAAGAGGTTCCTGTTGAgttctga
- Protein Sequence
- MNITCNGFDIVEKEKCKETEGVDIRSSKDCENGLLEIGVSFRGFKKVPLVKLPKIDISPFLQRTGRPKSRIKPGNGFKVSEVHRGRLSQLCKVKLVRDDLNKLKSLYNRNITNSDTEASSSSEMVITCRICKKSYNNVKKLQNHLQDKHIILTANGKPQKRVSFSDHVIIHEVKEYHKCRKCTKIFEEYKSLKQHMRQKHKKRKCYICNYCTRSFADRTIFKVHIKLHCDICGELLPNKTKYLIHRREVCRIFKYYKCKLCDDTFFNIMHLKDHGYDHIDPCLVCDDCKDRFKQKCLLAHHISFLHNKNKPDSLYNMLKVGNERVYLCNFCDETSVEKELIEKHCENLPDLSNKVITDYKDYYFCDQCMEKFETEKEMLQHKWTHFLSKNKILANMLNITNNNKQKKIKTTYNINEEIPEYMKPVIVLEKLKEPQKTDEVNILSDNMTLVNVSDLKHPLVDKKSKKTLFSKHKCENCGRYFSSNYCLKRHYATLHSDFDQLRCKVCEETFVWPSLLRTHKCIRLNLPEMPFEDARPEIQFENQNPGDVEDFPMIQDDLPMIDDDGDDYMNSVDFEIPAPIVELTEYDDAVANSENNLNCEQLQNLGYKVVMQEVPVEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -