Tcom023509.2
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292381.1:2555107-2571146[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.002 0.18 12.9 0.1 1 23 453 476 453 476 0.96 2 28 0.089 8 7.7 2.3 1 21 581 601 581 602 0.94 3 28 0.076 6.8 8.0 4.3 2 23 661 682 660 682 0.95 4 28 0.0013 0.12 13.5 1.4 2 23 724 747 723 747 0.96 5 28 0.099 8.9 7.6 0.2 1 23 753 775 753 775 0.93 6 28 0.029 2.6 9.3 0.6 1 21 781 801 781 802 0.96 7 28 0.029 2.6 9.3 0.6 1 21 835 855 835 856 0.96 8 28 0.029 2.6 9.3 0.6 1 21 889 909 889 910 0.96 9 28 0.029 2.6 9.3 0.6 1 21 943 963 943 964 0.96 10 28 0.029 2.6 9.3 0.6 1 21 997 1017 997 1018 0.96 11 28 0.029 2.6 9.3 0.6 1 21 1051 1071 1051 1072 0.96 12 28 0.029 2.6 9.3 0.6 1 21 1105 1125 1105 1126 0.96 13 28 0.029 2.6 9.3 0.6 1 21 1159 1179 1159 1180 0.96 14 28 0.029 2.6 9.3 0.6 1 21 1213 1233 1213 1234 0.96 15 28 0.029 2.6 9.3 0.6 1 21 1285 1305 1285 1306 0.96 16 28 0.029 2.6 9.3 0.6 1 21 1339 1359 1339 1360 0.96 17 28 0.029 2.6 9.3 0.6 1 21 1411 1431 1411 1432 0.96 18 28 0.029 2.6 9.3 0.6 1 21 1465 1485 1465 1486 0.96 19 28 0.029 2.6 9.3 0.6 1 21 1519 1539 1519 1540 0.96 20 28 0.029 2.6 9.3 0.6 1 21 1573 1593 1573 1594 0.96 21 28 0.029 2.6 9.3 0.6 1 21 1627 1647 1627 1648 0.96 22 28 7.8 7e+02 1.6 0.1 1 11 1681 1691 1681 1693 0.82 23 28 7.4 6.6e+02 1.7 0.2 1 11 1720 1730 1720 1733 0.83 24 28 3.5 3.2e+02 2.7 0.1 1 14 1735 1748 1735 1751 0.82 25 28 0.044 3.9 8.7 0.9 1 21 1771 1791 1771 1791 0.97 26 28 0.029 2.6 9.3 0.6 1 21 1793 1813 1793 1814 0.96 27 28 0.029 2.6 9.3 0.6 1 21 1847 1867 1847 1868 0.96 28 28 0.032 2.8 9.2 3.6 1 23 1901 1923 1901 1924 0.96
Sequence Information
- Coding Sequence
- ATGTCTTTGGTGTGCGGCACTTGTAGGTCAGTTCTAGGCTACGATATAGACCTAACATCAGTAACAAAGAACCAAATAGTAGAACTCCATGATAACGCTTACCAATTCCTCATTAACCTCGACCTCAACGAATCAGGCTTGGGCCAAACATTTGACGAAAACTTGGACAATGATGAAGTGTACGTCTTAGATGACGGCACACAAATAAGAGCTTCGCAAATACACTTCGATAACGAAGATGATCCCTTAGATATAACTCTTGAAAAACTACCATTCGTCAAACTTAATAATGAGCAAGAAGAAAAAGAGACAACGGATACAAAATTTGATGATGTTGATTACAAAATTGTTGCTAGTCCAGTACCAACAGTTAGTTCAAGTCCGAAACACGGTTTTATTAACAGCGTGCCTTTTAAATTGGTTTGTAATAACACAGTTGGCTTCGAAGCTCAATTCACGAAGTATTTAGAACAGAGTACCAAAACTTACGCTACATTAAACAATGTTACTAAAAAGAATAAGTCACCAAGGAGTCTTATTAAAGACAATTTCAATGATAAAGATGAATTTATGTATACTAGAGAGGAAGTATTGAATATGTTGAAAGATTCACCCGTTACAAGTATTCCATATGAAGTGACTGAAAAGAAACATGTCCGGAAGACTGATCCTACCCGAATGGTGCAGAAATGTGCTTCCAAAGTCGTTGATATAGAAGGTTTAGTAGTAGCTGACAGAGGCAATAAAAACTGCTTTATCTGCGGTCTTAGTGTCACAGATAAAGTATACATATTCGATAAAGAAGACCAGAAAATTCACAGATGTTCACCTCAAAAGAAAATGTCTACACAACTCAAAATTATATGCGAATCGTGCCTCACAGATAACTTTATGCCATCGAGAATGAAAGGACCAAATCAATACTTAAACTCAGACGAATATTTGGTCATAAGGGACAATCAGCAGTACATATTTCAGAAGACTAAgcatttcaaattcaaaaatgatGAGCGGGATATGAATAAGTTAAAAAAGGATGAGTTTGTTAAAGTGGAAATTGGTTCTGATGGGGAGATAGTCACAAAGCCGATAGATAATGATGACGTTTTGATAGTTAATGAGAGGAAAGATAGCTCAAGTGATATAGAGATAGTGGAAGGTGTACAGGAGATAGATAAGATAATAGATAACTTGGACGATGCTGACGAAGatgttaaagtttatttggGGAAGTATGAAGAGGGGAGCGATTTCAGGGAGTTGAAATGCAGATTTTGCGAGCGTCAATTCACTGAGATCGTAGAAGTGATAGACCACTGTGACTCTCATAAACACGACCTTGAGGACGATGTCGTCTATCCCTGTCCGTTGTGCGATTATGgTTATCCCACACACCAATGGCTAAAGGGCCATATAAGGGCAGCTCATGAAAAAAGCGAACCCACACAAGCCAAATCTTCTAGTTTGATTCCTGGGAGATACTTAAATTtcctatatgtatataaaaatatatttataggaCATACCAGTAACGAAAGTcaagaaacaattaaaacAGAGTCAAATAATACCTCGACCTCACAAGACATGGTGATAAAGACTGAAGTGAAGCAGGAGTCTGTGAGCTCCGATGATGAAATATGGATAGTTCAGACCAACGATGATGAAGCGTCGGGACAATTGAAGAAGATACTGAGGGCTGCTAATGTGGAAAAACCAGATGAGAAGTCAAAAAAGAATCACAAGTGTTTTGGTTgcagTCAAATATTTCCTTCTGCTGAAACACTGACGTCACACAAATGCAGGCGACGTGGCAGGAAACGGAAGTCGGATAACGAAGacgattttatttgtatacctACCGAGGAGGATTTTATAAGGAGAGCGCAAGGCAGACCTCGTCAAGTCGATGCGATTAGCGAACAGAGTGGTCAAaaaataagaaaatattccaAAGAGACATCCGAAGCTCAAATCGTGACGTGCCACAATTGTAATCAATCGTTTACATCCAAAGTCAGGCTCAAATTTCATATGCAATTCCACGACAAGTCATCCCTCCTGCGATCGGACGGCACGTACGCTTGCACGTCGTGCTGCGACGTGTTCGCCAGCGAGGCGCAGCTGTTCGACCACGTGCACTTTCAGCACGACAAGCGGAAACGGTGGCAGTGCCCCGTGCACGGCTGTGAGAAGACATTCTACTTGAGAGCGACCCTAACGAAGCACAGTCGCACGCACACTGACACGCGCCGCTACGTGTGCGTCACCTGCGGGAAACGGTTTCTGGATAAACAGACGCTGGACGAACACGGTGTTACGCATTTACAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGAGCATTGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGTAGAAGGCACAATATGTCCAATGACAATGTCCGTACTCCCAGATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTATCAAGCCGTACCAGTGCCACATCTGCCTGAAGCAGCTGACGCGCGTGTCCCGGCTGCGCATGCACGTGCGCGCGCACcacgcgccgcgcgcgccgcagCCCGTGCGCGCGTGCGCCGCCTGCAACAGAGCGTTCCCTGATTTGCCGCACGCAcagGAGCACGCAAACAAATCAACCGAATGTATAGAAGCGTTCGCGAGCGAATTGAAGGAAGAGGTCGATACCACTGTCCAGTTGTCGCCCACCAGTGGACTAGTCAGGCATACAGTACAAGTTATAGGTGAGTATCAGAATCCTTAA
- Protein Sequence
- MSLVCGTCRSVLGYDIDLTSVTKNQIVELHDNAYQFLINLDLNESGLGQTFDENLDNDEVYVLDDGTQIRASQIHFDNEDDPLDITLEKLPFVKLNNEQEEKETTDTKFDDVDYKIVASPVPTVSSSPKHGFINSVPFKLVCNNTVGFEAQFTKYLEQSTKTYATLNNVTKKNKSPRSLIKDNFNDKDEFMYTREEVLNMLKDSPVTSIPYEVTEKKHVRKTDPTRMVQKCASKVVDIEGLVVADRGNKNCFICGLSVTDKVYIFDKEDQKIHRCSPQKKMSTQLKIICESCLTDNFMPSRMKGPNQYLNSDEYLVIRDNQQYIFQKTKHFKFKNDERDMNKLKKDEFVKVEIGSDGEIVTKPIDNDDVLIVNERKDSSSDIEIVEGVQEIDKIIDNLDDADEDVKVYLGKYEEGSDFRELKCRFCERQFTEIVEVIDHCDSHKHDLEDDVVYPCPLCDYGYPTHQWLKGHIRAAHEKSEPTQAKSSSLIPGRYLNFLYVYKNIFIGHTSNESQETIKTESNNTSTSQDMVIKTEVKQESVSSDDEIWIVQTNDDEASGQLKKILRAANVEKPDEKSKKNHKCFGCSQIFPSAETLTSHKCRRRGRKRKSDNEDDFICIPTEEDFIRRAQGRPRQVDAISEQSGQKIRKYSKETSEAQIVTCHNCNQSFTSKVRLKFHMQFHDKSSLLRSDGTYACTSCCDVFASEAQLFDHVHFQHDKRKRWQCPVHGCEKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARVPAAHARARRRHNMSNDNIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARVPAAHARARRRHNMSNDNIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVFPAAHARARRRHNMSNDNVRTPQIKPYQCHICLKQLTRIKPYQCHICLKQLTRVSRLSIARARRRHNMSNDNSQIKPYQCHICLKQLTRVSRLRMHIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRVEGTICPMTMSVLPDQAVPVPHLPEAADARIKPYQCHICLKQLTRVSRLRMHVRAHHAPRAPQPVRACAACNRAFPDLPHAQEHANKSTECIEAFASELKEEVDTTVQLSPTSGLVRHTVQVIGEYQNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -