Tcom015920.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- ZFX
- Assembly
- GCA_958496195.1
- Location
- OY292370.1:462410-466516[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.17 16 6.8 0.2 1 23 231 253 231 253 0.97 2 13 0.0059 0.53 11.5 0.7 1 23 286 309 286 309 0.96 3 13 3.5e-07 3.1e-05 24.8 0.2 2 23 331 352 331 352 0.97 4 13 4.8e-06 0.00043 21.2 0.2 1 23 359 382 359 382 0.96 5 13 1.2 1.1e+02 4.2 0.3 1 23 388 410 388 410 0.78 6 13 0.0013 0.11 13.6 0.3 2 23 416 437 415 437 0.92 7 13 0.41 37 5.7 0.7 1 23 530 552 530 552 0.96 8 13 7.4e-05 0.0066 17.4 2.2 2 23 559 581 558 581 0.92 9 13 4e-05 0.0036 18.3 0.9 1 23 587 609 587 609 0.96 10 13 0.0003 0.026 15.6 0.1 1 23 675 698 675 698 0.95 11 13 0.001 0.094 13.8 3.1 1 23 704 726 704 726 0.95 12 13 0.063 5.7 8.2 0.0 1 23 732 754 732 754 0.89 13 13 0.079 7.1 7.9 0.0 6 20 762 776 761 778 0.93
Sequence Information
- Coding Sequence
- ATGGATAGATTGCATGAAGTTGTGGTTCCTGAGTACCGGCAAGGACCCTCAACCAGTTCACAGGATCTAATGGATACTTCCAGAGGTGATACAGACCTGAGCAACACATGTCGCCTATGCACGGCCGTCTCCGAGACCCTCGTGCCAATATTCGATGGAGAAGGTCTGCAGAACAATATAGCTGACAAGATCAATGAATATCTGCCTGTTAAGGTGAATGTTGAAGACAGTTTGCCCCTGACCATCTGCTATCAATGTATGAGCACGGTGCTGGCATGGCACGACTTGGTGCTGTGCTGTGTGCAGGCAGACTCCGCGCTCCGGGCTCGGGAGCCAGTTGTCAGCACAGTACAGgaaTTGAATCACCTTGAAAATTTGGACAGTGAAGACAAAGATGAAAAGTCGAAAGCGTGTAgcgatataaaatataaactcgAGGAATACTTGAGCCTTTTACGGCTGGAGGAGGTCCACTTGGGGGTCGCGTGCCACAAGTGTCGCGGCAAACCGTCCTTTACGGTGGAACAGTTCGCGGAGCACATGTACGAGCGGCACCGCGCCGCCACCGGCGGCCTCGACGCGCTCGCCGGCTTCGTGCGCGAGCACGCCACCTTCCAGCAGCCGCTCGACACGGAGGGCTCGGACCGCGAGCGctcgcccgccgcccgcgccgcgccgcccgccgcccgctaCCGCTGTCCCGCGTGCGCGCACGCCTTCACCTCCGTCACGCGCCTCGCCAACCACGCCGCGCGCCACCGCGCCGTCACCTGCTGCGGCACCGAGTaccgcgccggcgccggcgccgagCTGGCCGCGCACGTCCGCGCCGCGCACGCCATCCGCCCCCCCGCGCACTCGTGCATGACGTGCGGCCACACCGCGCGCGACGCCGCCGCGCTGCGCGACCACGTGCGCCGCGCGCaccccgcgccgccgcgcccgccgcgccgcgccctcCCCGACACTAATCAGAAGGCCATCCCGGCCGTGTGCCCCGACTGCGGCCTCGTCTTCTCCAACAAGTACAACATGTTCGCGCACATGAACCGCCACGGCACGCCGCCCGAGCGACACATCTGCGAAACGTGCGACCGCGTGTACTCGACGCCCGGCAACCTGCGGGCCCACGAGCGCGTCGCCCACCGGGGCGAGCTCCCGCACGCGTGCTCCTCCTGCGGCGAGCGGTTCGCCACCACCAACGGGCGCGACATGCACGCGCTCGTGCACCGCGAGCCGACGCTCGTGTGCTCGCGCTGCCCGGCCGCGTTCCGCCACCCGCAGTCCCTGCGGCGCCACGAGGAGGCGCaccgcgggcggcgcgcgcacTCGTGCGGCGTGTGCCGGCGGCGGTCGGCGCCCTCCTCCCCCGAGCCCGAGTCCGCGCTCGGCCGGGTCCGCGCCGCGCTCGGGGCGCTCCGCGCGCACTACGCCGCGCGccacgccggcgccgcgcccgcgtCCTCCCCCGAGCGCTCCCCGTCGCCGGCCGACCTGTGCGCGGCGGGCGTGCGCCGCTCGCGCCGCGACTCGCCCACGCGGCGCGAGCTGGCGGCGGCGCTGGTGCGCGTCGACGGCAAGCCGGCGTACGAGTGCGGCGCGTGCGGCAAGCGGCTCGCCTCCGCGCACACGTACCTGTTCCACCGGCGCATCCACACGGGCGAGCGGCCGTGCGTCTGCCACGTGTGCGGCAAGAGCTTCCGCGCGCCCAACGGCCTGCGCCGCCACCTCACCGAGACGCACGAGCGGCGCCGCCGGCACGCGTGCCCCACCTGCGCCGCCACCTTCGCCAACTCGCAGAACCTGAAGCAGCACCTGCGGCGGCACACGGGCGAGCGCCCGCACGCGTGCGCCGAGTGCGGGCGCCGAGCCGGCGCCGCCGTAGGAGACGCGGCGACGGCGCGGCCGGCCGCCGTGCGCGTGGACGCGGCGGGCCGGCGCCGCGCCACCTGCGGCACGTGCGGCGCCGAGATCGCGGCGGCGGGCTGGCGGCGCCACGCGCGCCTGCACGGCGGGGAGCGGTACCCGTGCGCGGCGTGCGGCCGCCACTACTCGGACGCGACCAACCTGGCGCGGCACGCGCGCGCACAGcacggcgggcggcgcgcgcacGCGTGCGCGGTGTGCGGGCGGCGGTTCGCGCGCGCCCAGCACCTGCACGACCACTCGCTGACGCACTCGGCGCGGGCCTCGTTCCTGTGCGAGGTGTGCGGCGCGGCGCTGCGCTCGGCGGCGGCGCTGCGCGCGCACGGCGCGGGTCACGCGCGGCGCCACTCGTGCGCGTGCGGGGCGTCGTTCCCGCGCGCGGGCCAGCTGCGCGCGCACACGCACCGCGCGCTGTGCTCCGCGCTCGCCGGCTATGGGTGA
- Protein Sequence
- MDRLHEVVVPEYRQGPSTSSQDLMDTSRGDTDLSNTCRLCTAVSETLVPIFDGEGLQNNIADKINEYLPVKVNVEDSLPLTICYQCMSTVLAWHDLVLCCVQADSALRAREPVVSTVQELNHLENLDSEDKDEKSKACSDIKYKLEEYLSLLRLEEVHLGVACHKCRGKPSFTVEQFAEHMYERHRAATGGLDALAGFVREHATFQQPLDTEGSDRERSPAARAAPPAARYRCPACAHAFTSVTRLANHAARHRAVTCCGTEYRAGAGAELAAHVRAAHAIRPPAHSCMTCGHTARDAAALRDHVRRAHPAPPRPPRRALPDTNQKAIPAVCPDCGLVFSNKYNMFAHMNRHGTPPERHICETCDRVYSTPGNLRAHERVAHRGELPHACSSCGERFATTNGRDMHALVHREPTLVCSRCPAAFRHPQSLRRHEEAHRGRRAHSCGVCRRRSAPSSPEPESALGRVRAALGALRAHYAARHAGAAPASSPERSPSPADLCAAGVRRSRRDSPTRRELAAALVRVDGKPAYECGACGKRLASAHTYLFHRRIHTGERPCVCHVCGKSFRAPNGLRRHLTETHERRRRHACPTCAATFANSQNLKQHLRRHTGERPHACAECGRRAGAAVGDAATARPAAVRVDAAGRRRATCGTCGAEIAAAGWRRHARLHGGERYPCAACGRHYSDATNLARHARAQHGGRRAHACAVCGRRFARAQHLHDHSLTHSARASFLCEVCGAALRSAAALRAHGAGHARRHSCACGASFPRAGQLRAHTHRALCSALAGYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -