Tcom008852.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292361.1:8642719-8646769[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0035 0.31 12.2 3.1 2 23 32 53 31 53 0.96 2 14 0.00065 0.058 14.5 0.1 1 23 91 114 91 114 0.94 3 14 4.5e-05 0.0041 18.1 1.2 1 23 116 138 116 138 0.96 4 14 0.0017 0.15 13.2 0.0 1 23 175 197 175 197 0.97 5 14 4.7 4.2e+02 2.3 3.9 3 23 227 248 226 248 0.89 6 14 0.054 4.9 8.4 0.8 1 13 255 267 255 273 0.80 7 14 2.9e-05 0.0026 18.7 0.3 1 23 283 306 283 306 0.95 8 14 2e-05 0.0018 19.2 3.9 1 23 315 338 315 338 0.98 9 14 0.75 67 4.8 0.2 2 23 344 367 343 367 0.95 10 14 0.41 37 5.7 1.4 3 23 375 395 375 395 0.96 11 14 0.0048 0.43 11.7 0.3 1 20 400 419 400 422 0.94 12 14 0.0018 0.17 13.0 1.9 1 23 428 450 428 450 0.97 13 14 1.9e-06 0.00017 22.5 1.3 1 23 456 478 456 478 0.98 14 14 4e-05 0.0036 18.3 0.3 1 23 484 507 484 507 0.96
Sequence Information
- Coding Sequence
- ATGGCTTCATCcatagcttcacctgtatacCAGGAAGGGCCGCAGGAAATATACCTTCCGAAACAAACTGCCATTGACAAAATTGGCGGTATTTACTGCCACATATGTAATACAACATTTGGTAACAAGAAAGATTTTGATAGTCATTATTCGAAACATATTACTGGGGGTGGCGATATTGTGTACACTTGTGTTGCGtgcaagaaacaatttatTGGATATCCCAGCTTCCGTGGTCACTGCTACATTAAACATGTTGTCAAGAACAAGTTTCAATGTAACCTTTGCCCCAAATCATTTGCTAAACAAGCTATTCTTAACAGTCATATTGTTAGTGTTCATGAATTCAAATGTTCACAGTGTGATGAGAAATTCAGCTCGAAAAAAGATTTGGAGCTACATAAAGTTGTTCACATGAATAAATCAAGAGAAGAACCTCCGTACGACTGCTTCAGCTGCGGCAAAGCTATAACAAGTGTGGACATCTGCGAGGGTCACATTGATGATCATTGCCAGACTTTATATCCTTGTCCAATATGCAATAAAGTACTGCCAAACAAATTAGAAGCTACAAAACATTTGACAGTACATTTTAATGAAGCTTTACCTGAAGAAATAGTAACTACACCCACAACAGCTAGCAACGATAGCTCCATAGATATCCTCGGTGGAATTCTCTGTTGTCACTGCGATTTgttattcaaaaatagaacTGAATTTGACAATCATTTTGCTTTGGAACACGAGGACAACACCATTGTGTACACATGTCACATCTGTGGTAAACAATATGAAACATATCTTCTGTTTGGTAACCATTGTTACTTTCATATATCCAAAGACAAATTCCAATGTGATGAATGCGAGAAGACATTTCCCCGATTATCTCTTCTAGTGATACATACAGACTCGTTTCACAAAGTGGGTGCTAGTGAGAAGCCCTACCAGTGTGATACATGCGGTCATTCATTCAAGGCTAGGTACCGTCTTTTCAAACACATGCGGACCGTGCATGGAGACAATACCATCAAATGTCCCGAGCAAGGGTGTACTGCAGTATTCGACTGTCCTAAAGATCTAGTTCTCCATCAGAAAGAGCACAAGAGGTTATCAGACAACTGGTGTCGTAAGTGCGGACTGCGGTTCGTTTCTCTGGCGTCATGTGAGAAACATCTGGACGTGCACAAACTGACACAGTACTCGTGTCCCGTGTGCAATCGCGAGTACCGCGAGAAGTACCTCATGGTAAAGCACATTCCACAACATTTCGAAAGCGTGCTCCACATTTGCAAAGTTTGCGGTAAAACGTACAACGCCCGCAATCGCCTGATGCAACACGCCAAAACACACTCGGACCAACGAGCGTACAAATGCACCTATTGCCCCAAGAGTTTCTTCAAACCGAATGAGCTTCAACAGCACATAAACCTCCACACGGGCCAGCGCCCGTACGAGTGCGCCTACTGTCCAAAAACATTCGCCAGCTACCCGAATTGGAATAAACATCTTACACGCGTACATAATACCGATAAAACTGagattaaaaaacttaaattagcAAGAGACgcgaaaatgaataaaaaatcgtCTACAGATGCCAAATCGTCCCCAGTGGCTGCCGATTCAGGTACTGGATCGGCCAGTTCTGAAATTGATGTTTATAGCTTTGCTGAATCAGACGACAGTTTGAGTAGGGGCCCGTATCAGGAGTGGGCCATTGAAAACCCACAACCACTCATTGAAAACATAGACATGTTCGATATGAACACCATTCGCGATCCAAATAATGGGAATGTGATGTCCTTGACCGACACCGTTAATGCTGTAATTGATCGTATTGATTGCATGGATGATAATCTCAACCATAAAGATGAAAATGGTGACCTGACACAgattacaaatatttctgacgAGTTTACTTCTACATTCAAACCTTTAGATGATTCAAGTGATATTAAAGCTATTGTGGAACACATTGACGCAATGAGTGGCGACTTGGAGACGACCGCCGACAACTTCGGTTCAGTGGGTGCCGATGTAGCCGCACTTGATACTACCGACATTAAAGATATTATGCAGTTTGCCGAAATGTTGCCTGTCAACAGTGCTATGTTCGAAACTGACAATCAACCAATGATTGAACCGACATATATGCCAGCAAATTGTCCCACTGGATACGGGCTTGATTTCGTGCAGTCTGCACCAGACATGTACCAGGACGGGTTGATGAATCTCGACCACCACATAATGCAGCCTATCGACCCGTTGCTGACCACCACTCCGGAGGACAACATATTCACGCAGACTTTCCCCTACCAAACCGACACAGAGCCGCTGCACTACATGCAAAACAATTGGGAGCCGATGATCACGAAAGTGTTCAACTACGACGAACCGAACGACAACAGAATGTACGTCATGAAcagtaatatattttag
- Protein Sequence
- MASSIASPVYQEGPQEIYLPKQTAIDKIGGIYCHICNTTFGNKKDFDSHYSKHITGGGDIVYTCVACKKQFIGYPSFRGHCYIKHVVKNKFQCNLCPKSFAKQAILNSHIVSVHEFKCSQCDEKFSSKKDLELHKVVHMNKSREEPPYDCFSCGKAITSVDICEGHIDDHCQTLYPCPICNKVLPNKLEATKHLTVHFNEALPEEIVTTPTTASNDSSIDILGGILCCHCDLLFKNRTEFDNHFALEHEDNTIVYTCHICGKQYETYLLFGNHCYFHISKDKFQCDECEKTFPRLSLLVIHTDSFHKVGASEKPYQCDTCGHSFKARYRLFKHMRTVHGDNTIKCPEQGCTAVFDCPKDLVLHQKEHKRLSDNWCRKCGLRFVSLASCEKHLDVHKLTQYSCPVCNREYREKYLMVKHIPQHFESVLHICKVCGKTYNARNRLMQHAKTHSDQRAYKCTYCPKSFFKPNELQQHINLHTGQRPYECAYCPKTFASYPNWNKHLTRVHNTDKTEIKKLKLARDAKMNKKSSTDAKSSPVAADSGTGSASSEIDVYSFAESDDSLSRGPYQEWAIENPQPLIENIDMFDMNTIRDPNNGNVMSLTDTVNAVIDRIDCMDDNLNHKDENGDLTQITNISDEFTSTFKPLDDSSDIKAIVEHIDAMSGDLETTADNFGSVGADVAALDTTDIKDIMQFAEMLPVNSAMFETDNQPMIEPTYMPANCPTGYGLDFVQSAPDMYQDGLMNLDHHIMQPIDPLLTTTPEDNIFTQTFPYQTDTEPLHYMQNNWEPMITKVFNYDEPNDNRMYVMNSNIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -