Tcom014653.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- PATZ1
- Assembly
- GCA_958496195.1
- Location
- OY292368.1:6766737-6775960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4 1.3e+02 4.0 2.5 3 20 8 26 6 28 0.85 2 14 0.0046 0.41 11.8 0.3 2 20 34 52 33 54 0.94 3 14 0.089 8 7.7 0.3 1 12 206 217 206 226 0.83 4 14 8.7 7.8e+02 1.5 0.1 1 19 358 376 358 376 0.93 5 14 0.00012 0.01 16.8 2.3 1 23 383 405 383 405 0.98 6 14 0.0096 0.86 10.8 3.6 1 23 419 441 419 441 0.98 7 14 0.96 87 4.5 0.2 1 9 464 472 464 485 0.78 8 14 1.7e-06 0.00015 22.6 0.3 2 23 492 513 491 513 0.96 9 14 0.00028 0.025 15.6 2.8 1 23 529 551 529 551 0.98 10 14 1.4e-06 0.00013 22.9 4.5 1 23 557 579 557 579 0.98 11 14 0.001 0.091 13.9 4.5 1 23 585 607 585 607 0.97 12 14 1.9e-06 0.00017 22.4 0.4 1 23 613 635 613 635 0.98 13 14 0.00031 0.028 15.5 1.1 1 23 639 661 639 661 0.98 14 14 0.00087 0.078 14.1 0.0 1 23 669 692 669 692 0.96
Sequence Information
- Coding Sequence
- ATGGGAGACTTAACATTGAGTTGTCCTCTGTGTTGCAATCAGACATTTAGTTCTAAACAATGTTTACTTGATCACCTAACAAATACATTAGACAGTTTGTACTGTCCAATATGCAATAACAAATTCAACTCTTTAGAAAAACTTACAAACCATTtgagttttgaaaattgtacacaacatttaaataatgacaAAATTGAATCCAAATTTTCTACACTCCAACCCAAATTTGTGTTTGAGAGTGATACTATCAATGACAATGATTCTGACCCTCTTGAATCAAGTGATTTAACACTAGAAAAtgAAACTCTCACAGACACAACAACATACACTATTCCTGTTCAAAGTCTAGACTCCGTAGAAACGGATGTCAGTAAAATGTGGAATGTAGAACTCATGAAGGCAAACCTTCAGACGCAGGAACTGAATGTAGTCAAGGAGTCGGCGAACAGATATGTGATAATAACTGAGGAACATCAGGATTTAACCGATGATATTGTGACTAAACAGAATCAGGATGGTACTATATCTTTGACTAGTGTAAAAGATATGAAATCAGAGCCAGACACACTGATAGCTCCGGCTGAAACGGAACAGGATGGTAACGATGAATTGTACACCTGCAACACATGCGGGGTGTCATTCTCATCTGTCATAGAACATATACAGAACTACCACAATAACCAGGAAGTTGTTGTTGAGGGCTCCCTTGAAGACAATGGTTCCCTACCAATAGAATTCGAATACGACAATATGAAACCTGAAGAACCAGCGATTGTTAGTGACAAGATGACGTCGAGACGCGTCATTACGGACACGGGAGACATTGTCGAGACGCCCATAGTTCTGAAGGCTGATTCACTAGGTGGTCTCGAATTagTTGATACAGCATCTCCGGAACCAGTCAAAGAACAAACAAATGAGAAAAAAGGCAAATCATCCAAACGTTACATACAAGTTGAAAAACTATGCGACAGCGTTATTAAGGATCTCAAACAGACTGATCGTGTTCCATACCACAAAGTTACACTGAATGAGGCAGTAACTGCGGATGGAAGCAAAGTGAAGTTATACAAGTGCATGTGGTGTGAGGTGACTGTCAGCGCTCTTACTGACTTCAAGCAACATCCGTGTAAAGCATTGAAATATTCGTGCAGTAAATGTACAGTGTCATATGACAATGCAAAGTCATTGTGCGCTCAtatgaaaatgcataaaacaaaaacagATAAAGCACCGGAAGAGCCTGAAATATATGAATGTGAATTTTGCTGTACAGTATTTCCGACGAATAAATCTTTGAAACTCCATAAAAGGATGCATGACCCTCTTAAGGCACGTCCAATCGAAGCGCCAGTGAATTCCCACAACGGTATAGACCAGGGCCGGTACAGATGTAATGTTTGTGACAAAATGATACCCGTCGCATACAAAACTATTCACCAGAACTCGCACAAAACTGACACAATGCTTAACTGCGGTATTTGTAATAAGAAGTTTAGTTCCGCGTCGTATTTGGAAATGCATATGAATGTACATAATATGGATAAGGTGCCACTAAATAAACAAGACAAAACTCTGCCATACAGCTGTTTATACTGTGATAGAAGGTTTACGAGGCCACACGAGAAAGTTAAACATGAACGGATTCATAcaggtGAGAAACCCCACTCGTGCGAGATATGCGGCAAATCGTTCCGCGTGTCGTACTGCCTCACGCTACACATGCGGACACACACTGGGGCGCGGCCATATGCCTGTCAATATTGCGGGAAAAGATTTAAAGCGCACAGTGTATACAATCACCACTTGTTAACTCACTCGGATGTGCGTGCGTACAAATGCCCATATTGCCCGAAAGCGTTCAAGACCTCCGTACAGTTAGCGGGGCACAAGAACTCGCATACCAAGCCTTTCTCTTGCACACATTGTAACAGGCCGTTCGCGTCGCTGTACGCGGTGCGCGTGCACACGGAGACGCACGCGCGCTCCAACAACCTGAAGTTCTCGTGCGCGCTCTGCGGCGCCTCCTACGCGCGCGCCTTCGCGCTCAAGGACCACGTGCGGCAGGCGCACGACGCGCAACACGACAAGACGCCGCTGACAGGACAAGACGAGTGGATAATGAAAGACGCGGCCAACGACAAGGATAGCATAGACATAGACAAAGAAATGTTAACAACTGGAACAGAGatcagctatcGCTCCAGAATTGACCATAGGTCACCGACAAGTACGACTACAGTTCGCTCGGGAACATTTGGATTGGACGATGGACAAATGGACAGCGGTACTGTACTCAGACGAGTGCAGGATGTCTCCATGGCAACGACGGACGTGAAGGAGGCTGCCAAAGACCAAATGAGCGATTCGCCCCGTGTTGCTTCTCAGAACGCGTCTCGTACGGCGCATCACTCAAATCAAATGTTCTCGAGCAAACTGTAG
- Protein Sequence
- MGDLTLSCPLCCNQTFSSKQCLLDHLTNTLDSLYCPICNNKFNSLEKLTNHLSFENCTQHLNNDKIESKFSTLQPKFVFESDTINDNDSDPLESSDLTLENETLTDTTTYTIPVQSLDSVETDVSKMWNVELMKANLQTQELNVVKESANRYVIITEEHQDLTDDIVTKQNQDGTISLTSVKDMKSEPDTLIAPAETEQDGNDELYTCNTCGVSFSSVIEHIQNYHNNQEVVVEGSLEDNGSLPIEFEYDNMKPEEPAIVSDKMTSRRVITDTGDIVETPIVLKADSLGGLELVDTASPEPVKEQTNEKKGKSSKRYIQVEKLCDSVIKDLKQTDRVPYHKVTLNEAVTADGSKVKLYKCMWCEVTVSALTDFKQHPCKALKYSCSKCTVSYDNAKSLCAHMKMHKTKTDKAPEEPEIYECEFCCTVFPTNKSLKLHKRMHDPLKARPIEAPVNSHNGIDQGRYRCNVCDKMIPVAYKTIHQNSHKTDTMLNCGICNKKFSSASYLEMHMNVHNMDKVPLNKQDKTLPYSCLYCDRRFTRPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQYCGKRFKAHSVYNHHLLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTHCNRPFASLYAVRVHTETHARSNNLKFSCALCGASYARAFALKDHVRQAHDAQHDKTPLTGQDEWIMKDAANDKDSIDIDKEMLTTGTEISYRSRIDHRSPTSTTTVRSGTFGLDDGQMDSGTVLRRVQDVSMATTDVKEAAKDQMSDSPRVASQNASRTAHHSNQMFSSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -