Basic Information

Insect: Timandra comae
Gene Symbol: pol
Assembly: GCA_958496195.1
Location: OY292380.1:3779859-3806737[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.5 2.2e+02 3.2 1.0 2 23 1365 1386 1365 1386 0.86

2 16 1.3e-05 0.0012 19.8 5.9 1 23 1392 1414 1392 1414 0.98

3 16 0.00046 0.041 14.9 0.1 2 20 1421 1439 1420 1440 0.96

4 16 3.3 3e+02 2.8 0.7 2 21 1491 1510 1490 1512 0.81

5 16 1.3e-05 0.0012 19.8 5.9 1 23 1518 1540 1518 1540 0.98

6 16 0.00024 0.021 15.9 0.1 2 21 1547 1566 1546 1567 0.94

7 16 0.00084 0.075 14.1 1.8 1 23 1585 1608 1585 1608 0.97

8 16 0.00063 0.056 14.5 0.2 1 23 1614 1637 1614 1637 0.94

9 16 0.0073 0.66 11.2 0.3 2 23 1644 1666 1643 1666 0.96

10 16 0.00082 0.074 14.2 5.2 1 23 1700 1722 1700 1722 0.97

11 16 0.00025 0.022 15.8 0.0 2 21 1729 1748 1728 1749 0.94

12 16 0.00075 0.067 14.3 0.4 2 23 1870 1892 1869 1892 0.96

13 16 0.035 3.1 9.0 4.3 3 23 1900 1921 1898 1921 0.92

14 16 0.019 1.7 9.9 1.0 2 23 1957 1978 1956 1978 0.91

15 16 3.7e-07 3.3e-05 24.7 1.8 1 23 1983 2005 1983 2005 0.98

16 16 8.6e-05 0.0077 17.2 0.3 2 23 2012 2034 2011 2034 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.5	2.2e+02	3.2	1.0	2	23	1365	1386	1365	1386	0.86
2	16	1.3e-05	0.0012	19.8	5.9	1	23	1392	1414	1392	1414	0.98
3	16	0.00046	0.041	14.9	0.1	2	20	1421	1439	1420	1440	0.96
4	16	3.3	3e+02	2.8	0.7	2	21	1491	1510	1490	1512	0.81
5	16	1.3e-05	0.0012	19.8	5.9	1	23	1518	1540	1518	1540	0.98
6	16	0.00024	0.021	15.9	0.1	2	21	1547	1566	1546	1567	0.94
7	16	0.00084	0.075	14.1	1.8	1	23	1585	1608	1585	1608	0.97
8	16	0.00063	0.056	14.5	0.2	1	23	1614	1637	1614	1637	0.94
9	16	0.0073	0.66	11.2	0.3	2	23	1644	1666	1643	1666	0.96
10	16	0.00082	0.074	14.2	5.2	1	23	1700	1722	1700	1722	0.97
11	16	0.00025	0.022	15.8	0.0	2	21	1729	1748	1728	1749	0.94
12	16	0.00075	0.067	14.3	0.4	2	23	1870	1892	1869	1892	0.96
13	16	0.035	3.1	9.0	4.3	3	23	1900	1921	1898	1921	0.92
14	16	0.019	1.7	9.9	1.0	2	23	1957	1978	1956	1978	0.91
15	16	3.7e-07	3.3e-05	24.7	1.8	1	23	1983	2005	1983	2005	0.98
16	16	8.6e-05	0.0077	17.2	0.3	2	23	2012	2034	2011	2034	0.94

Sequence Information

Coding Sequence: ATGTCATCGTCGGAGATCTCTCGTTATACACCACCTTTAGACAATCGGAAAAATACGAGGCCGTCACGCTGTAGGGATCGTCGTGAACACCCTTTGCGGAGGCTACGGCCCGACGTTTCTCCGAAAAACCGACGAAAGCGCGAATCGTACCGCAGTAGATCGCTTCGTCGGCGACCCCCCACTGAGAGTTCCGATAGTAGTTCCTCTCGATCTAGCCCATCAAGGCGGCGGAGACGGACACCTTCGACTGATCGTCGACGATACTCTACTAGTACGGCTACGCGTTCAGTGGAAAGTACTGACTATTCTAGCCGTGATTCATGCGTTCAACTCGGAAAAAGAAAACGTCAGCGATCCAGATATTCCACACCGGAAAGTCTATCAACTGAATTAAACTCAGAAAGACCATCGCGTCGAAGGTACCGTTTGAGAAAGTCCCAGAAGAGACGGCGTTACTCAAGATCTCAAACGTCTAGAGACTATGGGGTACTCAAGAAACTTGCTCGTTTGTTCGGTAAGGCTGATCAGCACTTCGAAGGGGCACAACATGTGATCCCTGAATTTAACCCGGATGCAAACGACCAGTCAGCCGTTAACTGGATACGTAAAGTAAACGAAACTGCCAGAATTTATAAATGGAgtgacaaacaaataattttctatGCCATTCCAAAATTAGCTGGCCACGCTAAGAAATGGTACCAAGGCTTGAGTACTATTAAATTGAGTTGGCGAGAATGGCaaaagaaaattgttaaaGCTTTCCCCGACGATCGCAATTATGCTGATCGACTTTCGGAAATGTTGGAAAGGAGAAGTAGAAGGGAGGAATCACTAGAAGACTATTACCATGACAAGGCACGATTGGTGAAAATGTGTGGTATAGAAGGACGTAATGCAGTTGATTGTATAATTAACGGCATATTTGATTTTAACATACGTCTCAATGCCCAAGGCTCAAGTTTTAAAAGACCGTCTCAACTACTGAAATATCTTCGCCGAATTTCTAAGAAAAACAACATACTCTCACGCAAAGCCAATCAATTAAATAGGTATGAACAAAATACGAAGGCTGGAGAAAAACTATTGAATGTGGGAAGTCAGAAAGCAATTAATGTTACCAATCGCGAAGGTTTTAGGCAAATTCAATGCTTCAACTGTCTGGAAGTAGGCCACACCTCGCGCACGTGTACAAAACCTAGAAAACGGTGTGATAAGTGCTCTCGTTTAGGACATCATAGTCTCAAAtgtgaattaattaataatatccgGGATAGAACCAATGTTAATATCAAAGACAGTTCAGACAGTAAAGTGGAGTCCGTGAAgaaagttttaaagataacaCCTGGAGACTTGACAAATGGCAAGTATTTTAAATCTGTAaccttaaataatattaagcgGTCGGCATACATTGACTTTGGAAGTCAATGTACATTAGTACGTAAGAGCGTAGCAGAGGAATCTTATTTACCACTTATTAAATCAGGGTTACCCGTTATTAAAGGATTTGCTTTAGGAAGTGTGGTGCCTCTCGGCAAAACTACTGTTAATATCGTATGTGATGCTGTAGAGGCAGATGTCGAAATCTACGTGGTTGAAGATGATTTATTAGATACTGACGTTCTCATCGGACAATCTTTGACTGAATTACCAACAGTTGTGGCTTACAAAACTAATTCTACCTTAAACTTATACTGTGATGATTCAGAGGCAGAAAGAATAAGTCTTTACTGCCGTCAGGAAGTAACATTGCAAGTAGGGATGAACACTAATAGTATACTTTCTCCAGGTGCACTGTCGTTTGACGTTAACAAAGTAAACTTAGATAATGAACCAGTTACATCACAATCTAAAACCAAATGTCCAATAACGTTAGACATGATAAACGTCGTACCAGGAATCAGTGAATCTGAAAAAGATCGTCTGATTCAATTGTTAAATAACTTTAGAGATTGTTTCGCATTGACTGCATGCGAGCTTGGTCTTACCAACATAACGGAGATGACTATTAGGTTAAACGATTCTACACCTGTGACTTATAAGCCATATCGACTACCGTTTAGCGAACGGGCTAAAGTAAGGGAAATAGTAGGTGACCTTCTGTCGAACGGGGTTATAAGAGAATCTCAGTCAGCGTACTCTAGCCCAATTGTCCTAGTGAAGAAGAAAAATGGTGAGTCTCGCCTGTGCGTCGATTACAGGGCACTGAACAAAAAGACTATTAAAGATAGCTACCCCATGCCAGTCATTGATGATCAATTGGACCGATTAAGTGGAAAATCACTCTTCACTAGCCTAGATCTTGCATCAGGCTATCATCAAATCCCTGTGGCTGAAGACTCACGTCACATAACAGGTTTCGTAACTCCCGATGGGCATTACGAGTATACTCGTATGCCCTTTGGCCTTGTAAATGCCCCGGCTGTATTTCAAAGCATGATTAATAAAGCTCTTGGTGCAAAACGCTTTGATTTAGCCATACCTTATCTAGATGATCTTTTATGCACAGCCAGTACTGCAGATGAAATGTTTAATAAGCTTGAATCCATTTTTCAACTACTAAAAGACGCTAACCTTACGCTGAacctaaaaaaatgtttctttttccAATCTAAGCTTGATTACTTAGGATTTGAAATATCAGAAGAAGGCCTTAAGCCCGGTAGTACAAAGATACAGGCTGTACAAGAGTTTCCCCGCCCAAGCAATGTACACCAGGTAAGACAATTTGTCGGGCTAGCAAGTTTTTTCCGAcgatttgtttataattttgctTGCATTGCTAAGCCCTTGACGAAACTGACTAAGGCAGATGTGCCGTGGGTATGGGGTGAGGAACAAGAGACAGCATTTATCGATATTAAGTCAAAGCTCATTACAAGACCAGTGCTAGCATTATACAATGCTGAGTTTATTACAGAGGTGCATTGTGATGCTAGTAAGGTGGGGGTAGGCGGAATACTTTTACAGAAACCTAACCAAGAGTCACCACTGCGGCCTGTCGCGTATTTCAGTCGGCAGACCACCAAAGAAGAAGAGTTTTGGCACTCTTATGAATTAGAGACCATAGCCGTTGTGATGTCGCTGAGAAGGTTTCGTGTATATCTGATTGGCATCGAATTTAAAGTCATTACTGACTGCAACGCCTTACGCTCCACGTTGACGAAACGTGATTTGTTGCCAAAAGTTGCTAGATGGTGGCTTATTCTCCAAGAATATAATTTCTCCGTTGAGTACAGACCAGGTCATAGTATGCAGCATGTGGATGCGTTAAGCCGAAATCCGGCCCCTATGGTGGAACAAgaagaaattgaaattttgaatatcACCACAAAAGATTGGCTTCAAACCGTTCAGATGTCAGACTccaatttaaaacatattaagaATATCTTAGATACAGttgaaataatattgaaagaagAAGATACTTCTTTAAATTTGCCTGACTGCCAGAAAGAGGAAGCGGATTCGAATCCTGTGCTagATGACGATAATATAGAGGACAGTGATCATGACAATGACAGACATTCGGATATACAAGAAGAAATACCACCGGAAGTTAGTGAGAAGGAACAGTGTAATGAAGGGAAAACAGttgAAACGCCGGCAGTAACGAATGACAATAGATTGTCGGATGATGACGACTTCTATTGGGAAGATAGTGAAATGGACACCATGATAAGCGGGCCACTACTAGTACCAGATACCACCCCTGCCCCTGACGTCATCGATGGCAAGAAAACAACCCGCTACAGCAAACGAATCAAGAAACAAAACGATATCaaaccaaAAGTGAAAGCGTCGTCTAAAAAGGCGAAACAAAAACCAAATGACCAAAGTGAAGAGAAACCAAAagAAAAATCAAAAGCGTCGTCCAAAAAGGCGCAACAAAACACAAATGAATCAAGTGAGGAGAACTCTATACTCAAAGGATTCGGTACACTCAGTAAGTTCACAATACACAAATTGGACGTACATAACATAGATGACAGGGCGTACTGTAACGCCTGCGACGCTGTATACAATTCTCACAAAATACTGACACTGCACAAGAACAGTTTCCATATGTTAGGTAAGAAACGAAAGTGTCCTCACTGCGATTATGTAGGTTATAGTACAAATGCAATGAGTAGACATAGCTTTCTTCATGCAAAGACCAGAGATTTTCATTGCAAGTATTGTAAGAAGTCTTTTAAAAGGAGAACTAATTTGGCTCAGCATTTGAAAATACACACGGGCGATAAGAAGAAAGTGTGCAAAGAATGCGGACAAGCGTTCGTGCAGAAGGCGAGCCTTAACTATCATATGGGATTCGGTACACTCAGTAAGTTCACAATACACAAATTGGACGTACATAACATAGATGACAGGGCGTACTGTAACGCCTGCGACGCTGTATACAATTGTCACAAAATACTGACAATGCACAAGAACAATTTCCATATGTTAGGTAAGAAACAAAAGTGTCCTCACTGCGATTATGTAGGTTATAGTACAATAGCAATGAGTAGACATAGCTTTCTTCATGCAAAGACCAGAGATTTCCATTGCAAGTATTGTAAGAAGTCTTTTAAAAGGAGAACTAATTTGGCTCAGCATTTGAAAATACACACGGGCGATAAGAAGAAAGTGTGCAAAGAATGCGGACAGGCGTTCGTGCAGAAGGCGAGCCTTAACTATCATATGGCCAAACAAATGAGAATATACCGCCTCACGGACTACATAATGCTTGACAACGGAGAGTATAAGTGCAATCGGTGTGACAAAATATCAGcatcaaataaatcatttaggAGACATGTCAGAGAACaacatttgaaattatttaggtACGTGTGTGGCCGGTGTGGTGAAGGATTCAATTCACCGGCACAGTTCACGAAACATAAGTTAAACGTTCATAACATAGACGATAGGGTGCGTTGTAACGCGTGCGACGCAGTCTTCAACACCACCGGCCAGCTTGTGAAACACACCAACAGCTTCCACATGATGGGCAAGAAACACGTGTGCTCCTACTGTGATTACGAATGTTTTAGTGTAGAAGCGAtctataaacataattttaaacataaaacggTCAAAGATTTCCATTGCAAGTATTGTAAGAAGTCTTTTATTAGGAAAACTACTTTAGATCAGCACGAGAAGATACACACGGGTGATAAGAAGAAAGTGTGCAAGGAATGCGGACAAGCGTTCGTGCAGAAGGCGAGCCTTAACTATCATATGGCCGTCTCAGCGACTATGGCACAGCACACTGCACTTCGGCCGGTCAGCAAGCAGAGACGCACTTCTCTCCTGGTCTACGCAGCAGTCAGCCACTACGTATCACTGCAACACTCCGACTCACTGGAGCACACGCAGCATCACCCCGACAGAACACCTGAATACCAACGAGTGATGATGAAGGAATGTGGGTTAGAATATGTTAGAACTGCgcgcgagccgagcgagcgtgtCGCGGCGGCGAGCGGCGAGGcacaaaaatatgttacaTACGTATTCGctagcggcgcgggcggctgGGccTCCCTGCTGAAATTTTCCTATCCCCCCTGTTCCGCAGACTACACAAAACTTATAAACGGAAAGCTAAAATGTAAAAGATGTGACAAAACAACTCGCTCAGAGGCCGCAATGAATCGTCATATCAATATTGTGCATTTGAAAATGCCTTACCATTTGTGTAAACTATGTAATGGAAGATTTAGAACAAGGTCACAGTTTACGAAACATAAGTTAAACGTTCATAACATAGACGATAGGGTGCGTTGTAACGCGTGCGACGCATTCTTCGACGCCAAGAGCAGACTGCAGTTCCACATGCTCAATTTCCATAAGTTAGGTACAAGAATAAAGTGCCCGCAGTGTGACTACGAATGTTATAGCAATGAAGCACTAACTAAACATAGTTATGCACATGGAAATAGAGAATATAATTGCAAGTATTGTCCGAAGtcttttaaaagaaacaataatttgGTTCTGCATATGAAAATACACACGGGCGATAAGAATAAAGTGTGCAAAGAATGCGGACAGGCGTTCGTGCAGAAGGCGAGCCTTAACTATCATATGGGTAAATATCATCCCGAGGTGCcgttctga
Protein Sequence: MSSSEISRYTPPLDNRKNTRPSRCRDRREHPLRRLRPDVSPKNRRKRESYRSRSLRRRPPTESSDSSSSRSSPSRRRRRTPSTDRRRYSTSTATRSVESTDYSSRDSCVQLGKRKRQRSRYSTPESLSTELNSERPSRRRYRLRKSQKRRRYSRSQTSRDYGVLKKLARLFGKADQHFEGAQHVIPEFNPDANDQSAVNWIRKVNETARIYKWSDKQIIFYAIPKLAGHAKKWYQGLSTIKLSWREWQKKIVKAFPDDRNYADRLSEMLERRSRREESLEDYYHDKARLVKMCGIEGRNAVDCIINGIFDFNIRLNAQGSSFKRPSQLLKYLRRISKKNNILSRKANQLNRYEQNTKAGEKLLNVGSQKAINVTNREGFRQIQCFNCLEVGHTSRTCTKPRKRCDKCSRLGHHSLKCELINNIRDRTNVNIKDSSDSKVESVKKVLKITPGDLTNGKYFKSVTLNNIKRSAYIDFGSQCTLVRKSVAEESYLPLIKSGLPVIKGFALGSVVPLGKTTVNIVCDAVEADVEIYVVEDDLLDTDVLIGQSLTELPTVVAYKTNSTLNLYCDDSEAERISLYCRQEVTLQVGMNTNSILSPGALSFDVNKVNLDNEPVTSQSKTKCPITLDMINVVPGISESEKDRLIQLLNNFRDCFALTACELGLTNITEMTIRLNDSTPVTYKPYRLPFSERAKVREIVGDLLSNGVIRESQSAYSSPIVLVKKKNGESRLCVDYRALNKKTIKDSYPMPVIDDQLDRLSGKSLFTSLDLASGYHQIPVAEDSRHITGFVTPDGHYEYTRMPFGLVNAPAVFQSMINKALGAKRFDLAIPYLDDLLCTASTADEMFNKLESIFQLLKDANLTLNLKKCFFFQSKLDYLGFEISEEGLKPGSTKIQAVQEFPRPSNVHQVRQFVGLASFFRRFVYNFACIAKPLTKLTKADVPWVWGEEQETAFIDIKSKLITRPVLALYNAEFITEVHCDASKVGVGGILLQKPNQESPLRPVAYFSRQTTKEEEFWHSYELETIAVVMSLRRFRVYLIGIEFKVITDCNALRSTLTKRDLLPKVARWWLILQEYNFSVEYRPGHSMQHVDALSRNPAPMVEQEEIEILNITTKDWLQTVQMSDSNLKHIKNILDTVEIILKEEDTSLNLPDCQKEEADSNPVLDDDNIEDSDHDNDRHSDIQEEIPPEVSEKEQCNEGKTVETPAVTNDNRLSDDDDFYWEDSEMDTMISGPLLVPDTTPAPDVIDGKKTTRYSKRIKKQNDIKPKVKASSKKAKQKPNDQSEEKPKEKSKASSKKAQQNTNESSEENSILKGFGTLSKFTIHKLDVHNIDDRAYCNACDAVYNSHKILTLHKNSFHMLGKKRKCPHCDYVGYSTNAMSRHSFLHAKTRDFHCKYCKKSFKRRTNLAQHLKIHTGDKKKVCKECGQAFVQKASLNYHMGFGTLSKFTIHKLDVHNIDDRAYCNACDAVYNCHKILTMHKNNFHMLGKKQKCPHCDYVGYSTIAMSRHSFLHAKTRDFHCKYCKKSFKRRTNLAQHLKIHTGDKKKVCKECGQAFVQKASLNYHMAKQMRIYRLTDYIMLDNGEYKCNRCDKISASNKSFRRHVREQHLKLFRYVCGRCGEGFNSPAQFTKHKLNVHNIDDRVRCNACDAVFNTTGQLVKHTNSFHMMGKKHVCSYCDYECFSVEAIYKHNFKHKTVKDFHCKYCKKSFIRKTTLDQHEKIHTGDKKKVCKECGQAFVQKASLNYHMAVSATMAQHTALRPVSKQRRTSLLVYAAVSHYVSLQHSDSLEHTQHHPDRTPEYQRVMMKECGLEYVRTAREPSERVAAASGEAQKYVTYVFASGAGGWASLLKFSYPPCSADYTKLINGKLKCKRCDKTTRSEAAMNRHINIVHLKMPYHLCKLCNGRFRTRSQFTKHKLNVHNIDDRVRCNACDAFFDAKSRLQFHMLNFHKLGTRIKCPQCDYECYSNEALTKHSYAHGNREYNCKYCPKSFKRNNNLVLHMKIHTGDKNKVCKECGQAFVQKASLNYHMGKYHPEVPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -