Tcom001688.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292354.1:2042332-2045482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00038 0.034 15.2 1.2 1 23 170 192 170 192 0.97 2 9 0.042 3.8 8.8 1.2 3 23 201 222 200 222 0.92 3 9 5.8e-06 0.00052 20.9 2.0 2 23 231 252 230 252 0.95 4 9 6.8e-06 0.00061 20.7 0.3 1 23 260 282 260 282 0.98 5 9 5.7e-05 0.0051 17.8 0.9 1 23 290 313 290 313 0.95 6 9 3.6e-06 0.00032 21.6 2.3 1 23 318 340 318 340 0.98 7 9 2.3e-05 0.002 19.1 2.2 1 23 346 368 346 368 0.99 8 9 1.9e-05 0.0017 19.3 0.3 1 23 374 396 374 396 0.96 9 9 3.1e-07 2.8e-05 24.9 1.2 1 23 402 424 402 424 0.98
Sequence Information
- Coding Sequence
- atggacAGTCAGAAATTATCCATCGATAGcaaaaacatgaaaatatgTCGCGCTTGCCTGGTGAAGGAGGAAGCGTTCAATTATGTTTTCTTTGAGAACGTTTCGCCGGATGTGTTTTGCTTCTGCACTTCGATAGAGATAAATGAAGAAGAAGATATGCCCAGAACACTGTGCAACAGTTGCTACGAACTCCTAGACAAGTTTACAGAATTCAAAAGAACTTGTATACAATCACAGAACACATTGATAGGTTTGAGGAACGATTTGAAGTTGgaaaatgaagaaatgtccACTGATAAGATGTTTGTCGATGAAGATAATGTTAAGAGagatgttgatattaaaactgaGGATGATGATGGTTGTTGtgatgatGCACTAGAACCTGAGGATGATAatgaatatttagaaaatattaaaaatacagcACCTAGGATCAAGAGTAAGAAAAGAAAACTGAAAATTAAAGAACACAAGAAGGTGAAACTAAAAAGAGGTCACTTCTCATTCACATGTGAAATATGTaccaaaaagtttaaatatgaAGACAGATATGAAGCACACAAACTTATACACCAGGGTAAAACTGCATCAATACTTTGCAAGATATGTTCCAAACCATTCATGACATGGAGCGGCCATCAACGGCACTTCATCAGTGAGCACACGCAAGTCAAACTGGATACTCTCAAATGTACAAAATGtgggaaaatatttaaaaataaagaaacgtTAAAAATACACTCGAAGCTTCACATGAATGAGAACAAGAgcttgtatgtttgtgatatTTGCGGCAAGAATTTTTCTACAAGATTTGTTttgaaaGGTCACCTCCAAATCCACAACGAGAACAGAGAACGCACATATTCGTGCGAGCATTGCGGCAAAAAGTTCTTCAACAATGGCGTTCTGATGACGCACGTGGCGCGCGCGCACGCCGGCCGCCGCTACCACTGCCAAGTGTGCAACTACCCTTTCACGGACAAATACAACCTATCCAAACATCTACTAATACACGAGGGAATAAAGAACTATAAATGTGACCTTTGCGATAAACTATTCGGTACTCAACATAGCTTAGTGATCCATAAGCGAACTCACTCCGGTGAAAGGCCTTATTTATGCAGTTTTTGTCCTAAAGCTTTTATTTCTAAGAGTAGGTTGGTGGATCATATAAGGATTCATACAGGAGAGAGACCGTTCCGATGTAATGTTTGTAATCAGGCGTATACGCAGCGTGGATCGTTGAAGAGGCAcatgaaaatacataataaagtaaCTTTGATGGGGATTTGA
- Protein Sequence
- MDSQKLSIDSKNMKICRACLVKEEAFNYVFFENVSPDVFCFCTSIEINEEEDMPRTLCNSCYELLDKFTEFKRTCIQSQNTLIGLRNDLKLENEEMSTDKMFVDEDNVKRDVDIKTEDDDGCCDDALEPEDDNEYLENIKNTAPRIKSKKRKLKIKEHKKVKLKRGHFSFTCEICTKKFKYEDRYEAHKLIHQGKTASILCKICSKPFMTWSGHQRHFISEHTQVKLDTLKCTKCGKIFKNKETLKIHSKLHMNENKSLYVCDICGKNFSTRFVLKGHLQIHNENRERTYSCEHCGKKFFNNGVLMTHVARAHAGRRYHCQVCNYPFTDKYNLSKHLLIHEGIKNYKCDLCDKLFGTQHSLVIHKRTHSGERPYLCSFCPKAFISKSRLVDHIRIHTGERPFRCNVCNQAYTQRGSLKRHMKIHNKVTLMGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406960;
- 90% Identity
- -
- 80% Identity
- -