Basic Information

Insect: Timandra comae
Gene Symbol: -
Assembly: GCA_958496195.1
Location: OY292366.1:2252891-2261919[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.1 5.5e+02 2.0 0.1 1 23 85 108 85 108 0.93

2 20 0.41 37 5.7 0.3 2 23 112 133 111 133 0.94

3 20 0.0032 0.28 12.3 0.8 2 23 137 159 136 159 0.89

4 20 0.0012 0.1 13.7 0.7 3 23 404 425 402 425 0.96

5 20 0.00055 0.049 14.7 0.1 1 21 433 453 433 454 0.96

6 20 0.07 6.2 8.1 0.7 2 23 464 485 463 485 0.93

7 20 1.7 1.6e+02 3.7 0.4 1 23 501 524 501 524 0.79

8 20 0.00047 0.042 14.9 0.9 1 23 533 556 533 556 0.93

9 20 4 3.6e+02 2.5 3.9 7 23 605 623 598 623 0.84

10 20 2.7 2.4e+02 3.1 0.2 2 12 635 645 635 657 0.84

11 20 0.39 35 5.7 1.0 2 23 660 682 659 682 0.94

12 20 0.00029 0.026 15.6 3.8 1 23 688 710 688 710 0.96

13 20 5.8e-06 0.00052 20.9 1.1 1 23 717 739 717 739 0.96

14 20 3.4e-05 0.003 18.5 1.4 1 23 744 766 744 766 0.96

15 20 0.004 0.36 12.0 0.2 1 23 772 794 772 794 0.98

16 20 2.7e-06 0.00024 22.0 1.6 1 23 800 822 800 822 0.97

17 20 0.00086 0.077 14.1 1.6 2 23 829 850 829 850 0.98

18 20 0.0023 0.21 12.7 0.4 2 23 860 882 860 882 0.98

19 20 0.12 11 7.3 0.0 1 23 887 911 887 911 0.96

20 20 0.00053 0.048 14.7 1.3 1 23 917 940 917 940 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.1	5.5e+02	2.0	0.1	1	23	85	108	85	108	0.93
2	20	0.41	37	5.7	0.3	2	23	112	133	111	133	0.94
3	20	0.0032	0.28	12.3	0.8	2	23	137	159	136	159	0.89
4	20	0.0012	0.1	13.7	0.7	3	23	404	425	402	425	0.96
5	20	0.00055	0.049	14.7	0.1	1	21	433	453	433	454	0.96
6	20	0.07	6.2	8.1	0.7	2	23	464	485	463	485	0.93
7	20	1.7	1.6e+02	3.7	0.4	1	23	501	524	501	524	0.79
8	20	0.00047	0.042	14.9	0.9	1	23	533	556	533	556	0.93
9	20	4	3.6e+02	2.5	3.9	7	23	605	623	598	623	0.84
10	20	2.7	2.4e+02	3.1	0.2	2	12	635	645	635	657	0.84
11	20	0.39	35	5.7	1.0	2	23	660	682	659	682	0.94
12	20	0.00029	0.026	15.6	3.8	1	23	688	710	688	710	0.96
13	20	5.8e-06	0.00052	20.9	1.1	1	23	717	739	717	739	0.96
14	20	3.4e-05	0.003	18.5	1.4	1	23	744	766	744	766	0.96
15	20	0.004	0.36	12.0	0.2	1	23	772	794	772	794	0.98
16	20	2.7e-06	0.00024	22.0	1.6	1	23	800	822	800	822	0.97
17	20	0.00086	0.077	14.1	1.6	2	23	829	850	829	850	0.98
18	20	0.0023	0.21	12.7	0.4	2	23	860	882	860	882	0.98
19	20	0.12	11	7.3	0.0	1	23	887	911	887	911	0.96
20	20	0.00053	0.048	14.7	1.3	1	23	917	940	917	940	0.98

Sequence Information

Coding Sequence: ATGTCTTCAAGCGATTCAGACGACGAACCGCTATCGGTGTTagctacaaataaaaaaaacttactagGTAATGTTGATCTCGAAATAATTCCTATAAAcccgaagaagaagaagaaaaagactTATACCTCCAAGACGCCTTGTGATGTGACTATTGAACTGCAAGGGTTCAAGGAATCTCAACAACCTCCAGTTATAGAACGCCCCTCTGATGTCTGGATGTACTTGAAAGATTTGAATCCTATGGGACCATACAGTTGTTTGCTCTGCCCGGAGTGgttcattaataaaactaagataGCCCtacattatattgttaaccaCAGGAAAAGTTACTGTGGAATATGCAGgtacTTTGTGAGCAACAATGAAGAATGGGAGACCCATGAGAAGTTCCACGCGCCTTGGTCATGTTCGCAGTGTGAGAGATCCTTTGAAACTATGAAAGAGTTACGTAAACATTTCAGCGAGGTCCACAATTTGGTTCACTGCCGACTCTGCCACACCCGAGTgcctgatgatgatgaatacaAGACTCATCTGTTCCAAAAACACAGCGTCACCAACGTCGCTCGCAAAGACGACGACATTTTCTGGTCCTTCGAAGAAGATAACTACGATAAATTCAAATGTTTACTCTGTTCCAAACCAAACAATGGCATCCGAACATACGCTAACCACTACATGGCTTTTCATCGAATGACtctaaaatgtttatcttggatACTCTCCGGTAAAGGCTTCCTGTTTCCAATAAAAGGAATTGAATTAACTCCCCACTATGTTGAAAGCGAGCTGAAGGCTTACGGGAAATTTGGTTACATTGACTTGGAAGTGAGACCAAACTGTGAAACTGAATTGATTGAGCCGAAAAAAGAACCAATTGTTGAGGTCAATGATGAGGTGATTGTTGAACGACATGAACAGCTTGTTGTAGTAGAACTGGTACAGGAGGACATAAAAGAAGAAGTAAAATGTGATGCGGAGGAAAAATCTGAATCAAACGCAATATCTGAGGCAAATGAAATACTTAAAAGTTACAAAGGTGACGATGACTTTGACGTCACACTAATGGAAGTTATAGTTATACAGAAGTTTTATTCAGAATATTTATGCAGTACAATGAGAGATATTAATTCGAATACAATGCCGACAAattctaatattaattatgagaATGCTAACACTGATATGCTTATAGACACTGATTGCAGTCTATGTCCGGAGAGGTTTACTACATTAAACTCATTTATATCGCACATGTCGAAGATGCATTGTGTTAAGATGGTGTCGACGTATTCTTGTAGGGTTTGCGCTACTGTGTTTGATAGCTCGTCGGAGTTAGAAACACATATGAAACAGGAGTTAGGAGAGTTTGAAGACCTTTGGATGTGTCAGTTCTGTGATAAAGAGTTTGATGATAGACCTAAAACTCGTCAGCATTTGACAGAACACTGGAATGAAATAGAAACTGACAATTGCTTCAGCCCTCACATAGGGTtcaaatgtaaatattgtCCGATATTATTCTGGAATGAGATTGAGCGAGAAAAACATCAAGTGAAAGCGCATTTTGATACTTATAGTGAGGAATACTATAAGTGTGCGAGATGCGATGAGGTGTTTAGTGATAAGGTATGGCTAATCCACCACTTCCTACAAAGTCATCAAAGCAGTAAAGAACCTGTTCCCCTGTATCTCGTCAAGTGCTGTATCTGTTGCCTGGTGCTACCAACGGTGGAAGATATGAGGATCCACTTCGACCTGAACCATCCTGAGGCGAGGAAGGTGTTCTGTTCAGTCGGGACCTGTAAACACAAGCCTTTCAGCCATAAGAAGTCTTTTCAGCTGCATTTGACGATGTACCACCTCCGTCCGCGGCGTCGCGGCGACAACTCCAACAGCTGTTCCACCTGCGGGATGACGTTCGCGAGCGGCCGCGCGTGCGCCGCGCACGCCGCGCAGGCGCACCGCCTGTCCTGCGCCATCTGCAAGCGCATGCTCAGTACCTTAGATGAACGTAAAATCCACTACCTAATCTGCCACCCGGGCCAGCACCCGTTCCAGTGCGACATTTGCGACAAGTCGTTCCAGTACAAGTCGTCACTCTACCTCCACAAACACGAACACTCGCCCAACAAACAGGACTACACTTGCAGTTACTGCGGGAAGGTTTTTAAGAAGCGCGACTCGTTCCGCGAGCACGAGGCCATCCACCTGGGCCCGCGGCACGCGTGCTCGTACTGCCCGATGGTGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACGGGCGAGAGGCCCTACGCCTGCCCGCTCTGCGCCCGCACCTTCGCCGACAAGGGCGCCTGCACCGCGCACGCCAGAACTCATCAGAAAGAGCCCTCATTTGCGTGCATGTACTGCGGACAAACGTTCGTCCAGAAATCGAAGTTGACATACCATATTAGAAAGCATACGGGAGAAAATCTAGAAACATGCACAGTATGTTCAAAGATATTCACAAGCGGTTGCGCACTCCGTGAACATATGAAAATACACGAAAAGAAGACTGACGAGAATACTGCCAAATGTCCTCTTTGTGGCAAATGGTACAAAGACGAGAAGTACATGATGAAGCACGTGCGCACGGCGCACACGGGCGTGCGCTTCACGTGTCCGTACGCCGCCTGCGCCAAGCGCGTCACCAGCGCCGCCTCGCTGCGCGAACACGTGCTCTCGCACACCGGCGTCAAGACCTTTAAGTGCAAAATCTGTCCGAAAGCATACAACGTAAAGCGCACAATAGTAAGACATTTAAAACGACGTCACGgattcaaaatggcggacgAAAACTTGACACAGTTCTTCCATCGGCTCGACCCACGAGAATGCAATTTGAACCTTGACGAAGAAACAATAATGACTATATTCGGACCGCCTAAACGAAAAAGGACTGACGTTTTGATTAGTGATTACGTCACGTtgaataataagaaaatgaaGGTGAATGAAAATAATGAGGGTACTCCAACTAATAATCCTACTCAGGAACAGGAAGAATCGGAGAGTGAGAAGGAAAGTGAGACGGAAGAAATGAATGTCGTTATCAAAAGTGAACCATTGGACGATGATGGGTCGGAAACTAATTTAGAACCAACAGATTTTGTAAGTGTTAAGATTGAGTGTGTTGATGGTGCGGATGattattaa
Protein Sequence: MSSSDSDDEPLSVLATNKKNLLGNVDLEIIPINPKKKKKKTYTSKTPCDVTIELQGFKESQQPPVIERPSDVWMYLKDLNPMGPYSCLLCPEWFINKTKIALHYIVNHRKSYCGICRYFVSNNEEWETHEKFHAPWSCSQCERSFETMKELRKHFSEVHNLVHCRLCHTRVPDDDEYKTHLFQKHSVTNVARKDDDIFWSFEEDNYDKFKCLLCSKPNNGIRTYANHYMAFHRMTLKCLSWILSGKGFLFPIKGIELTPHYVESELKAYGKFGYIDLEVRPNCETELIEPKKEPIVEVNDEVIVERHEQLVVVELVQEDIKEEVKCDAEEKSESNAISEANEILKSYKGDDDFDVTLMEVIVIQKFYSEYLCSTMRDINSNTMPTNSNINYENANTDMLIDTDCSLCPERFTTLNSFISHMSKMHCVKMVSTYSCRVCATVFDSSSELETHMKQELGEFEDLWMCQFCDKEFDDRPKTRQHLTEHWNEIETDNCFSPHIGFKCKYCPILFWNEIEREKHQVKAHFDTYSEEYYKCARCDEVFSDKVWLIHHFLQSHQSSKEPVPLYLVKCCICCLVLPTVEDMRIHFDLNHPEARKVFCSVGTCKHKPFSHKKSFQLHLTMYHLRPRRRGDNSNSCSTCGMTFASGRACAAHAAQAHRLSCAICKRMLSTLDERKIHYLICHPGQHPFQCDICDKSFQYKSSLYLHKHEHSPNKQDYTCSYCGKVFKKRDSFREHEAIHLGPRHACSYCPMVFVQRSNMLRHERRHTGERPYACPLCARTFADKGACTAHARTHQKEPSFACMYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKIFTSGCALREHMKIHEKKTDENTAKCPLCGKWYKDEKYMMKHVRTAHTGVRFTCPYAACAKRVTSAASLREHVLSHTGVKTFKCKICPKAYNVKRTIVRHLKRRHGFKMADENLTQFFHRLDPRECNLNLDEETIMTIFGPPKRKRTDVLISDYVTLNNKKMKVNENNEGTPTNNPTQEQEESESEKESETEEMNVVIKSEPLDDDGSETNLEPTDFVSVKIECVDGADDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -