Tcom024067.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- topi
- Assembly
- GCA_958496195.1
- Location
- OY292382.1:1638300-1691353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.088 7.9 7.8 1.2 1 23 470 492 470 492 0.97 2 22 0.57 51 5.2 4.3 1 23 499 522 499 522 0.91 3 22 0.21 19 6.6 1.0 1 23 555 578 555 578 0.92 4 22 2.9 2.6e+02 3.0 1.2 2 23 591 613 590 613 0.91 5 22 0.00018 0.016 16.2 1.3 2 23 622 644 621 644 0.95 6 22 0.057 5.1 8.4 0.1 2 23 667 689 666 689 0.95 7 22 6.8e-05 0.0061 17.6 0.0 1 23 704 726 704 726 0.96 8 22 0.00052 0.047 14.8 0.2 1 23 732 754 732 754 0.96 9 22 0.0031 0.28 12.3 0.9 2 21 760 779 760 780 0.94 10 22 0.0029 0.26 12.4 0.5 1 23 1045 1068 1045 1068 0.97 11 22 7.4 6.7e+02 1.7 0.6 4 23 1095 1115 1095 1115 0.94 12 22 0.00033 0.029 15.4 0.1 1 23 1133 1155 1133 1155 0.96 13 22 0.018 1.7 9.9 1.0 1 23 1161 1183 1161 1183 0.93 14 22 0.00018 0.016 16.2 2.7 2 21 1189 1208 1189 1209 0.95 15 22 0.11 9.9 7.5 2.2 2 23 1422 1444 1421 1444 0.96 16 22 0.23 21 6.4 0.6 1 23 1448 1471 1448 1471 0.91 17 22 0.02 1.8 9.8 0.1 2 21 1484 1503 1484 1508 0.93 18 22 0.029 2.6 9.3 0.0 2 23 1517 1539 1516 1539 0.95 19 22 0.02 1.8 9.8 0.1 2 23 1554 1576 1553 1576 0.96 20 22 0.00076 0.068 14.3 0.2 1 23 1591 1613 1591 1613 0.94 21 22 9.9e-05 0.0088 17.0 2.1 1 23 1619 1641 1619 1641 0.96 22 22 7.6e-06 0.00068 20.6 0.7 3 21 1648 1666 1647 1667 0.96
Sequence Information
- Coding Sequence
- ATGCCGCCCCGTACTCCAAGACAAAGACCTAACAGGCGCTCAACCACAGAACATGAGACCATAGAGACAAACTACAACTACAATGACTCCAACGACGGAGGAGATGAGAGGAACTCCGACACAGAAGATGAGAAGAACATACAGATACAGCTGTATACGGAGGAGGTTGTCACGGAGCACGCGGATACCTTCTTGGAGGTCGAACTGGTGGAACTGGCTGAGAAGGATGAGAGTTACACATCCACAGACAACCATAACCAAAACACAATCCGCAAAGACAATAAATCAAAACCCAAAAGAGTTAAACCGCTGCAAAAGATTACCAGAAACAGGATAGATGACTCCTGGATCACACCGGACGGCAGACCTTATAGAGAGCTTAGCAGAGCTGAGAAACATGCCATAGCGGTCGCTAAGTATACTAAGAAAAATCCAGAGGTACATAGGCGGGCTGTAGCGAGGTATGCAGCCAAACATCCTGAGGTGCATAGAAGAGCGGTAGCCCGGTACGCTGCCAAGAATCCTGAGGTAAACCGCAAAACAACAGCGAAACACTCGGCTAAGAATAGGCAAGTGAACCAACGGGCTGTAGCTAGATATGCAGCGAAGCACCCCGATATCAACCGCAGAGCTGTAGCCCGGTACGCGGATAACCGCACTACCAAGAGTTGTACAGGTGTAGTCAGAAAACCTATAACCGAGTTATCCAACGAACTCGTCAATTGCAACTTGAACGAATCAGATGACGACGAAGAACTGATTAATGACAAAGAAAttgagaaaataataaaaaacagcacaagaaaaacaataaagaaaGAAACTAAAAGTGTTAGTAAACCTATATTTAACGAGGATgaggtcaaaattgaaatagaTGATATCACTGACAGTAAAATCGAAGTATTTAGTTATAGAAATGTTACTGATAGTCATAATAATGTAGCTGATAGTCACAATGATGTAGCTGATAGTCACAATGATAAAGCTGATAGTAAGGTTGGTGTAATTGATAGTAAAACTGGTGTATTTGATAGTTGTAACTATGTTACTGATAGTTTGAATGGTGTTTCTGATCGTCGTAATGATATAActgatagtaataataagtctACTGATAATAATGATCATGAACTAACTGATACAGAGGAATTAAATGATGATTCAAGTGATgataattatgatgatgaaTCTGAAATTGTTAAGAAGAAAAGTATTAAATCCACTAAAAAGCTGCTTAGTGGCACCcgtaaaactattaaaaaagAAcgaagaaataaaaaactaccaTTCAAAAATTATGCTGAATACGAGAAAGTGTTTGACATAGTGTTGTTCAAAAATCGCGAGGAAGAATTAGCCGAGTTCGCTCAGAGGAAGTTCGGTGCCTATTACCTCAATGCGAAGTACAGGTGTGACGTTTGCTTCACCGCGTATAGGTCACAGAAGTTGTTGGACTTCCATATGAAGTGGCATGATCCATCTGCAGGCGATCACAGCTGCGATATTTGCTCAATGCGTTTCCGCAGTCGCCTGCGCATGCAACATCACAGAAGTGTTGACCACAATGGAAGATTTTCATGTAAAATGTGTCCTCTCGTCACATACCACAGACACGTTTCGACAGGCAAGTGCCACGAGCGCACCGCGCACGCCACGCGGCACGTGTGCGGCGCGTGCGCGCGGACCTTCGTGTCCCACGCCGGGCTCCGGCAGCACCGGACACAGGTGCACAAGACAAGTTCGCTCGTGGAGACAGAGGGAGAAAAGAAATGCATCGAGTGTGACGTCATATTCACTACGCTACACGTTTACAATCTGCATTTGAAGAACTCCCACAAAGGAACGGTCAGACATATGACCGTGTGTGCCGATTGTGGGAAAGAATTCGAGAACAGACATCAGCTCTCCGAACACAGACGAGAGAAACATTCCGACAAAATCAGAGCGAAGAAGACATTTACTACAAACATTTGCGAAAAATCGCCATTAAAACTCACATGCGAATTGTGTAACGCAACGGGGACGTATCCGAAGTGGTTGTTTATTCATATGCAACAAGTTCACCCCGAGGTCGAGTATGTGCCGAAATCGGCAATTGCCAAGAAGTATCTGTGTGACCAGTGCGGGAAGGGATTcgttTCCCCTGGTCTGTTGGCGGAACATCAGAACGTGCACAGTGGAGCGCGGCCGTTTGAGTGCCAGCAGTGCGGCGCCAGGTTCCGCTCACTGGTGTATTTACGAGCGCACGAGGCCTCGCATCGCCCGCCTGCCAGGGAGTGCAAACACTGCGGAATGAAGTTCACCAGCGGAACGCAACTTTCCAATCACGTGAGGTATACTAGGAACAGAAAGATGTTATTTTGCGAAGATTGTGGTAACGTTTTGAGAAAAATGTACCTTATCAAGAAACAATGCAAAGCTGCCATTAAATTGTTAACGGAATGGGATAACATCGATCCTAAGCTCAGAAAACCTATTACAGATTTATCCAACCAACTTATCAATTATGATTTTACCGAATCCGACGACGATGACTATGATTACCAGTCAGACGAACTGACAGACGATCAATGTGAGACAAAAACACATTTGAAAACTACGAAACAAAATGAAAGTGTTAATAAACCAGGTGTTCTTGATGAGGACgagatcaaaattgaaatggaTGACAATGATAGTGCAATGGATGCGTTAGAGTGTCATAACAATGTTACTGATAATCTAAATGATGTGTCTGATAGTCAGAGTGATATAGCTGATAGTCAGGATGATGTTATTGATAGTAAAACTGGTATACTTGATAGTCATAACAATGTTACTGATAGTCTAAATGATGTGTCTgacaataataatgatatagcTGATAGGCAGGATGATGTTATTGATAGTAAAACTGagCAATACAGTAAATATCAAGAAGTGTTTGACATAGTGTGGTTCAATAATCGCGAGGAAGTATTGGCCGAGTTCGCTCAGAGGCAGTTCAGTGACTATTACCTCAATGCGAATTATAGATGTGACGTTTGCTTCACCGTGTCTGGGATACCGCCCCACACTCATACTGGGAGTGTTCCTTTCTCTTTCAGAAATGTGATGGAGAGCCATTACAAGCGACATGTGGGGATTGAATTCATGTGTAAAGTTTGCGGCACAGGTTTTCGCAATATGTCTACGAAGGCGGAACACGTGCGCAGAGAGCACGGCGCGAGTCATGTGTGCGGCGCGTGCGCACGTGCGTTCTTAAACGTCCAAGGACTGCGACAGCACAGGATACGTGTGCACAAGTGTAACGCGACGGGCACGCACCCCACGTGGTTCTACATGCACATGCTGCGCGTCCACCCTGAGGTCGAGTATACGAGTATAGCAAAACGACGCAGGAGGCTCAAGAAATATCTGTGTGACCAGTGCGGGAGGGGATTcgttTCCCCTGGCCTGTTGGTGCAACATAAGAACATGCACAGTGGCGCGCGGCCGTTCGCTTGCCAGCAGTGCGGGGCCCGGTTCTGCTTGCAAGTGTACCTGCGCAATCATGAGGAGGAACATCGCCCGCCCACGCGCGAGTGCAAGCACTGTGGGAACAAGTTCACAAGTGCACATCACCTCGCCAATCATATGAGGCTCAGAAAACCTATAACCGATTTATCCAACCAACTTATAAATTATGACTTTACCGAATCCGATGACGATGACATTGATTACCAGTCAGACGAACTGACAGACGATCAAtgtgaaataaaaactaaaacaccaAAAACTCCTTTGAAAACCacgaaaaagaaagaaagtgtTAATAAACCAGGTGTTCTTGATGAGGATgaggtcaaaattgaaatggaTGACAGTGATAGTACAATGGATGCGTTAGAGTTTCATAACAATGTTACTGATAGTCAGGATGATGTTATTGATAGTAAAACTGGCATACTTGATAGTCATAACAATGTTACTGATAGTCAGGATGATGTTATTGATAGTAAAACTGGTATACTTGATAGTCATAATGTTACTGATAGTCTAAATGATATAGCTGAAAGTAGTCATGACAAAGCTGACAGTGATGACTCTACTGATGATAAAGATATTGAAATTCATGAACTTGCTGATATAGAAGATTTAAAGGATGATTCAGACACTGAAACTGACGATAATTTTGAAGATGACTCTGGGATACCGCCCCACACTCATACTGGGAGAATTGCTTTCTCTTTCAGAAATGTGATGGAGAGCCATTACAGGAGACATAAAGGGATTGAAGTCAAATGTAAATTTTGCGGCACAGGTTTTCGCCATATATCTACGAAGTTGGAGCACGAGCGCAGAGAGCACGGCGCGAGTCATGTGTGCGGCGCGTGCGCACGGACTTTCTCAAACGTCCATGGACTGCGACTGCACAGGGCACTTGTGCACAAGACGCGTTCGCTTGTGGAGGCAGAGGGAGAAGCGAGATGTGACGAGTGTAACGTCACATTCACTACCGCAGACGTTTACAATATCCATCTGAAGAACACGCCGATACACAAAGATAAAGCCAGTAAAATGATCGTATGTGGGGTATGCGGCAAACAAGTTTCAAGCGGACGTGAGCTTATCGCTCACAAGCGAGAAGCACATCCCAGGAAAAACAGTCAGGAAAAACTAAGTGTGAAGAAAATATCTTGTGAAGTGTGCGATGCGACGGGGACTAGAGTGCAGTGGTTGTATAACCACATGCGGCGCGACCACCCCCACGTCGAATACATACCGAAATGTATAAGTCGTAGGAAGTACTTGTGTGACGAGTGCGGGAAGGGATTCATTtctcCGGCGACACTGGCGGACCATAAACACTTGCACACTGGAGAGCGGCCGTTCGCGTGCAAGCAGTGCGACAAGAAATACAGGACGAAGCAGAACTTGCAGTTACACGAAGAACGGCACAGACCCCCCGCGCGGGCATGTCCGCACTGCGACAAGAAGTTCTTCACTCAGTCGAACCTCAGTAATCATATACGGGGGGGTGGGGGGTCTTGGCAAATATGa
- Protein Sequence
- MPPRTPRQRPNRRSTTEHETIETNYNYNDSNDGGDERNSDTEDEKNIQIQLYTEEVVTEHADTFLEVELVELAEKDESYTSTDNHNQNTIRKDNKSKPKRVKPLQKITRNRIDDSWITPDGRPYRELSRAEKHAIAVAKYTKKNPEVHRRAVARYAAKHPEVHRRAVARYAAKNPEVNRKTTAKHSAKNRQVNQRAVARYAAKHPDINRRAVARYADNRTTKSCTGVVRKPITELSNELVNCNLNESDDDEELINDKEIEKIIKNSTRKTIKKETKSVSKPIFNEDEVKIEIDDITDSKIEVFSYRNVTDSHNNVADSHNDVADSHNDKADSKVGVIDSKTGVFDSCNYVTDSLNGVSDRRNDITDSNNKSTDNNDHELTDTEELNDDSSDDNYDDESEIVKKKSIKSTKKLLSGTRKTIKKERRNKKLPFKNYAEYEKVFDIVLFKNREEELAEFAQRKFGAYYLNAKYRCDVCFTAYRSQKLLDFHMKWHDPSAGDHSCDICSMRFRSRLRMQHHRSVDHNGRFSCKMCPLVTYHRHVSTGKCHERTAHATRHVCGACARTFVSHAGLRQHRTQVHKTSSLVETEGEKKCIECDVIFTTLHVYNLHLKNSHKGTVRHMTVCADCGKEFENRHQLSEHRREKHSDKIRAKKTFTTNICEKSPLKLTCELCNATGTYPKWLFIHMQQVHPEVEYVPKSAIAKKYLCDQCGKGFVSPGLLAEHQNVHSGARPFECQQCGARFRSLVYLRAHEASHRPPARECKHCGMKFTSGTQLSNHVRYTRNRKMLFCEDCGNVLRKMYLIKKQCKAAIKLLTEWDNIDPKLRKPITDLSNQLINYDFTESDDDDYDYQSDELTDDQCETKTHLKTTKQNESVNKPGVLDEDEIKIEMDDNDSAMDALECHNNVTDNLNDVSDSQSDIADSQDDVIDSKTGILDSHNNVTDSLNDVSDNNNDIADRQDDVIDSKTEQYSKYQEVFDIVWFNNREEVLAEFAQRQFSDYYLNANYRCDVCFTVSGIPPHTHTGSVPFSFRNVMESHYKRHVGIEFMCKVCGTGFRNMSTKAEHVRREHGASHVCGACARAFLNVQGLRQHRIRVHKCNATGTHPTWFYMHMLRVHPEVEYTSIAKRRRRLKKYLCDQCGRGFVSPGLLVQHKNMHSGARPFACQQCGARFCLQVYLRNHEEEHRPPTRECKHCGNKFTSAHHLANHMRLRKPITDLSNQLINYDFTESDDDDIDYQSDELTDDQCEIKTKTPKTPLKTTKKKESVNKPGVLDEDEVKIEMDDSDSTMDALEFHNNVTDSQDDVIDSKTGILDSHNNVTDSQDDVIDSKTGILDSHNVTDSLNDIAESSHDKADSDDSTDDKDIEIHELADIEDLKDDSDTETDDNFEDDSGIPPHTHTGRIAFSFRNVMESHYRRHKGIEVKCKFCGTGFRHISTKLEHERREHGASHVCGACARTFSNVHGLRLHRALVHKTRSLVEAEGEARCDECNVTFTTADVYNIHLKNTPIHKDKASKMIVCGVCGKQVSSGRELIAHKREAHPRKNSQEKLSVKKISCEVCDATGTRVQWLYNHMRRDHPHVEYIPKCISRRKYLCDECGKGFISPATLADHKHLHTGERPFACKQCDKKYRTKQNLQLHEERHRPPARACPHCDKKFFTQSNLSNHIRGGGGSWQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -