Tcom021743.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292378.1:6573340-6588996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0032 0.29 12.3 0.3 1 23 30 52 30 52 0.98 2 15 0.0034 0.3 12.2 0.0 1 23 58 80 58 80 0.96 3 15 0.0001 0.0092 17.0 1.2 1 23 114 136 114 136 0.99 4 15 0.013 1.2 10.4 1.7 1 23 142 165 142 165 0.93 5 15 0.68 61 5.0 1.4 2 23 175 197 174 197 0.95 6 15 0.021 1.8 9.8 7.0 3 23 215 236 213 236 0.95 7 15 5.4e-05 0.0049 17.9 0.6 2 23 241 263 240 263 0.96 8 15 0.00019 0.017 16.2 0.1 2 21 272 291 272 292 0.96 9 15 0.00071 0.064 14.3 0.4 3 23 369 390 368 390 0.96 10 15 3.1e-05 0.0028 18.6 0.6 1 23 396 418 396 418 0.99 11 15 0.012 1.1 10.4 5.6 1 23 424 446 424 447 0.96 12 15 0.032 2.8 9.2 3.8 1 23 456 479 456 479 0.97 13 15 0.011 1 10.6 1.7 3 23 493 514 491 514 0.92 14 15 5.1e-07 4.5e-05 24.3 0.8 2 23 519 541 519 541 0.95 15 15 2.1e-05 0.0018 19.2 0.9 2 22 550 570 550 574 0.94
Sequence Information
- Coding Sequence
- ATGACACAGGAGCAGGTTGATGAACAGACCAAAAATACCCActttgttgataaatatacatTAGTAGATAATAATGATGGAATTAACTATAAGTGCAACACCTGCGCAGAGTCATTCGATAGTACTAATGAAGTGATAGaacatataaaaaatcatGCTTTAGAAAGAccttatatttgtaaattgtgTGGTGTTAGCTTCAGCAGGGTGAATGGTATAATAGACCACGGTCGCGTTCACGGCGGGCCCACGTACCATTGCTCGTTCAACTGCGGCTTCCACACGCGGTATAGAAACGCGCTCCGGTTCCACGAGAGACGTCACAATGATgattataatTATAAATGCAAGGAATGCGGCAAAGGTTTCATGGTGAAGACTCGCTACGAACAACATCAGAACATACACAATAATGTGAAACCGTTTGTCTGCGATATTTGTGGGCTCTCCTTTTATCTGGACAACCTTTTAAAGGAGCACAAAAGTAAATGTCACCCGGAATCGAGCGCGATCGGAAGGCTCATGTGTCTGCAGTGCAGATACATTTGTGCCACCAAACGGAGATTGGACATGCATATTAAAATgGCGCACGGCAAAGCGGATGATTTGGAGCATGCCAAAGAGGATGAGACGGATCACTTGTGCCATGTATGTGGGAAGACGTTCTTAAAGCCTTGCCAATTGAAGGATCATACGAGAAAAAGTCATGGTGTTCGGTCTGTCTGCGAACTATGTAACTTTTCGACGGCAGATAAATACAATCTGAAAGTTCATATGAGACTGAAACATAACATTGGTCAGAAAAACAAGCCCCAATGTGATATTTGTGGCAAGTTCTTCGTTTTGAGGAATTCGTTGCTGAGGCATATAAAGGGAATAAGCTTGAAGGTCAACGAACGTAGACGGTCCAGGTCGCCCTCCGACACGCTGGAGGAGGGATTTAGATGTTTCGACGGAGTTTGGAGAGAGCTGGCTCACGACAGCgacagatggagggatttgggggagacctttgcccagaagtgggacgatacagGCGTTACCTACATGACAGTTTACGATATAGTGCATCACGGGCGTATTCACGGCGGGTACAAACGGTACTGCGAGTTCGGGTGTGGATACAGCTCACCGCATTGGAGCGCCCTCAGAGACCATGAGCGACGGCACAATAATGAATTCAAGtatAAATGCAAGGAATGCGGCAAGGGGTTCATGGTGAGAACTTGGTATGAACAACATCAGAACATACACAATAATGTCAGGCCGTTTGTCTGCGACGTCTGTGGGCTCGCCTTTCATATGCACAaATATTTAATGCAGCACAGAAATAAACATCACCCGGATTTGTCTGCGATCGGAAGGTACATGTGTGTGCACTGCAGTTACACATGCGCAACTAAAATGAGATTGGATACGCATATGAAAGTgGAGCACAGAAAGGATACGGATGATGAGTGTGATTCGCATCACTTGTGCGATACGTGCGGGAAGACGTTCTTGAGGGTCGAAGAGTTGACCAATCACAAGAAAGCACGGCATAGCATCAGGCCGGAGTGCGAATTATGCAACAAGACGTTTTCAAAGAAATCCAATCTGAAAGTACATATGCTTCTTATACATAATACTGAACAGAAAAATCAGCCCCAATGTAATACATGTGGCAAGTTCTTCGCTTTGAAGGGTTCATTGAACAGGCATATAAGGAGGTCGTACCTACATGACAGTATACGCCATAGTCCGTCACGGACGCGTCCACGGCGGGTACAAGCGGTATTGCGCATTTGGGTGTGGATACAGCTCACCTCATGGAGGAGCGATCAGAGACCATGA
- Protein Sequence
- MTQEQVDEQTKNTHFVDKYTLVDNNDGINYKCNTCAESFDSTNEVIEHIKNHALERPYICKLCGVSFSRVNGIIDHGRVHGGPTYHCSFNCGFHTRYRNALRFHERRHNDDYNYKCKECGKGFMVKTRYEQHQNIHNNVKPFVCDICGLSFYLDNLLKEHKSKCHPESSAIGRLMCLQCRYICATKRRLDMHIKMAHGKADDLEHAKEDETDHLCHVCGKTFLKPCQLKDHTRKSHGVRSVCELCNFSTADKYNLKVHMRLKHNIGQKNKPQCDICGKFFVLRNSLLRHIKGISLKVNERRRSRSPSDTLEEGFRCFDGVWRELAHDSDRWRDLGETFAQKWDDTGVTYMTVYDIVHHGRIHGGYKRYCEFGCGYSSPHWSALRDHERRHNNEFKYKCKECGKGFMVRTWYEQHQNIHNNVRPFVCDVCGLAFHMHKYLMQHRNKHHPDLSAIGRYMCVHCSYTCATKMRLDTHMKVEHRKDTDDECDSHHLCDTCGKTFLRVEELTNHKKARHSIRPECELCNKTFSKKSNLKVHMLLIHNTEQKNQPQCNTCGKFFALKGSLNRHIRRSYLHDSIRHSPSRTRPRRVQAVLRIWVWIQLTSWRSDQRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -