Basic Information

Insect: Timandra comae
Gene Symbol: -
Assembly: GCA_958496195.1
Location: OY292380.1:4533739-4540722[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00088 0.079 14.1 1.3 2 23 31 52 30 52 0.95

2 16 0.032 2.9 9.1 0.2 2 23 75 96 74 96 0.96

3 16 6.9e-06 0.00062 20.7 0.6 1 23 100 122 100 122 0.97

4 16 0.23 20 6.5 0.1 1 23 127 150 127 150 0.90

5 16 0.037 3.3 8.9 2.2 1 23 156 179 156 179 0.95

6 16 0.014 1.3 10.2 0.3 1 21 185 205 185 206 0.91

7 16 1.2 1e+02 4.2 1.1 1 23 252 275 252 275 0.85

8 16 0.11 9.5 7.5 0.3 2 23 298 319 297 319 0.96

9 16 0.0014 0.12 13.4 3.1 1 23 342 364 342 364 0.97

10 16 7.3e-05 0.0066 17.5 1.0 1 23 368 390 368 390 0.98

11 16 0.00043 0.039 15.0 0.3 1 23 395 418 395 418 0.96

12 16 4.7e-05 0.0042 18.1 2.2 1 23 424 447 424 447 0.98

13 16 0.0019 0.17 13.0 1.4 1 23 454 477 454 477 0.95

14 16 0.00048 0.043 14.9 1.5 1 23 483 505 483 505 0.95

15 16 5.6e-07 5e-05 24.1 1.0 1 23 511 533 511 533 0.99

16 16 0.0013 0.12 13.5 2.1 6 23 544 561 539 562 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00088	0.079	14.1	1.3	2	23	31	52	30	52	0.95
2	16	0.032	2.9	9.1	0.2	2	23	75	96	74	96	0.96
3	16	6.9e-06	0.00062	20.7	0.6	1	23	100	122	100	122	0.97
4	16	0.23	20	6.5	0.1	1	23	127	150	127	150	0.90
5	16	0.037	3.3	8.9	2.2	1	23	156	179	156	179	0.95
6	16	0.014	1.3	10.2	0.3	1	21	185	205	185	206	0.91
7	16	1.2	1e+02	4.2	1.1	1	23	252	275	252	275	0.85
8	16	0.11	9.5	7.5	0.3	2	23	298	319	297	319	0.96
9	16	0.0014	0.12	13.4	3.1	1	23	342	364	342	364	0.97
10	16	7.3e-05	0.0066	17.5	1.0	1	23	368	390	368	390	0.98
11	16	0.00043	0.039	15.0	0.3	1	23	395	418	395	418	0.96
12	16	4.7e-05	0.0042	18.1	2.2	1	23	424	447	424	447	0.98
13	16	0.0019	0.17	13.0	1.4	1	23	454	477	454	477	0.95
14	16	0.00048	0.043	14.9	1.5	1	23	483	505	483	505	0.95
15	16	5.6e-07	5e-05	24.1	1.0	1	23	511	533	511	533	0.99
16	16	0.0013	0.12	13.5	2.1	6	23	544	561	539	562	0.88

Sequence Information

Coding Sequence: ATGGCTGCCCATAATGAAGACAAGCTAGAAATATTTAACTATCCAAAAATTAGACACAGTTTCCCATTAAAGATCGATATAACAGATTTATCTTGTAACTTATGCGATAAAAAGTTCAGCTTCAATGATTTGAAAACTCATTTGAATACGGTGCATCGTTTGCCATGGAACTTCAAACACACAGATGGAGTAGTGCCATTTGCGTTGTCCGGCAAAGAGTTGAGATGCGTCCAATGCGATTTGCAGTTCGAAAGGTTTATGCCACTATTTGTGCATATGAACGAACATTACTCAACATTCGTGTGTGATACGTGCGGCAAGTCTTATGCGAGCCAGAAGAAATTAAGAAGTCATCGAGCGGTCCATGCTTCTGGGGAATTTCCTTGTCCTCAATGCGACATGATACTTGAGACTCTCACTGCTAAAAATCGTCATATAGTGCACGCACACGGGTCTAAGGATAGATATCGCTGTCCGTTTTGCAATGTTTACTTCGAGTCCTACCACAGTCGACTCAAGCACATGGGGTCTGTGCATGGGGATAAAACAGAGTACAAATGTTCCTATTGCCCAGCCGTTTTTATAAGTAGCACGTCCAGATATGTGCATGTCAAACAAGTTGTACAAATTAAAGTTGAAGTGGAAACTGAAATGAATTCAGCGGCAAAAGATCGTCGGGAAGCGTTCAGGAATAATATAGCAACAATATTAGAAACGTGTACAGCGTACCCTTTCAAATACAGGAAAGGCATGTATCTATGCTTCTATTGCAAGCAGACGTTCTTGGAACCAGAGAAATTGAGAGAACACAACCTGTATCAACATTTAGAATCGAAAGAGATACTGAAACCACGGAAATATGAGCCGTTAAAAATGGATTTCGCTAACACTACTTGCAGAATATGCAATGCACAAATAGATGATTACAGGACATTGAAATTGCATATCAGAGAGCATGGTAAAGAGATTGATTGCACTTGGGAAGAGAGTGTTCTGCCTTACAAGTTGAGTGAGAAAGACGTACACACTTGCCAAATCTGCGGAAAAGTATACGAAATGTTCCTAAGCTTGCACAAACATATGAACGAGCATTACGAGCATTTTATCTGCGAATTTTGTGGCAAAAGATTCGCTACATCACAAAGAATGATGAACCACGCTCGAACGCATGAACGTGGAGAATTCCCTTGCAAGATTTGTAGTGAAACTTTCTCGTCACACGCAGCTGTATACGCTCATATATCGAAAGTGCACAAGCTGAATAAAAGATACAAATGTCCTATATGCGATGAGAAGTTTGTGTCCTACAAACACAGGCTAAAACACCTCAATACTGTTCACGGAGAGAAAACAGCAGTATTCCCTTGTCCATCGTGTGATAAGGTCTTCGATTTGTGCAGCACAAGAACAGCTCATATAAGATTTCAGCATCTCCAAGAGAGGAACCATATCTGTTCCGTTTGCGGGATGAAGTTTTTCACGAACTACGAACTTCAGGAACATTCTATAAAGCATGGTGGAGAAAGAATCTATCAATGCGATGTCTGCAAGAAATCTTATGCCagattaaaaactttaagaGAGCATATGagaatacataataatgataGAAGATTTGTCTGTATCGCTTGTGGACAAAGCTTTGTGCAGAACTGCAGTTTGAAGCAACATGTTAGGGTTCATCATCCTgctactttttaa
Protein Sequence: MAAHNEDKLEIFNYPKIRHSFPLKIDITDLSCNLCDKKFSFNDLKTHLNTVHRLPWNFKHTDGVVPFALSGKELRCVQCDLQFERFMPLFVHMNEHYSTFVCDTCGKSYASQKKLRSHRAVHASGEFPCPQCDMILETLTAKNRHIVHAHGSKDRYRCPFCNVYFESYHSRLKHMGSVHGDKTEYKCSYCPAVFISSTSRYVHVKQVVQIKVEVETEMNSAAKDRREAFRNNIATILETCTAYPFKYRKGMYLCFYCKQTFLEPEKLREHNLYQHLESKEILKPRKYEPLKMDFANTTCRICNAQIDDYRTLKLHIREHGKEIDCTWEESVLPYKLSEKDVHTCQICGKVYEMFLSLHKHMNEHYEHFICEFCGKRFATSQRMMNHARTHERGEFPCKICSETFSSHAAVYAHISKVHKLNKRYKCPICDEKFVSYKHRLKHLNTVHGEKTAVFPCPSCDKVFDLCSTRTAHIRFQHLQERNHICSVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCIACGQSFVQNCSLKQHVRVHHPATF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -