Tcom023065.2
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292380.1:3887286-3901198[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.1 4.5e+02 2.2 0.1 3 23 291 312 289 312 0.90 2 22 0.0043 0.38 11.9 0.5 1 23 333 355 333 355 0.98 3 22 0.0096 0.86 10.8 0.1 1 23 359 381 359 381 0.96 4 22 0.65 58 5.0 0.2 2 23 386 408 385 408 0.88 5 22 5.1e-05 0.0046 18.0 1.4 1 23 444 467 444 467 0.97 6 22 0.001 0.091 13.9 1.0 1 23 473 495 473 495 0.97 7 22 7.2e-07 6.5e-05 23.8 1.5 1 23 501 523 501 523 0.98 8 22 0.0033 0.3 12.2 0.6 1 23 572 594 572 594 0.96 9 22 0.025 2.2 9.5 0.2 2 23 666 688 665 688 0.95 10 22 0.0013 0.12 13.5 1.7 2 23 694 716 693 716 0.94 11 22 0.0029 0.26 12.4 1.9 1 23 721 744 721 744 0.93 12 22 0.32 29 6.0 0.2 2 23 747 769 747 769 0.96 13 22 0.0012 0.11 13.6 1.0 2 22 776 796 775 796 0.94 14 22 1.6 1.4e+02 3.8 1.8 1 23 852 875 852 875 0.89 15 22 0.077 6.9 8.0 0.1 3 23 904 925 902 925 0.95 16 22 0.053 4.7 8.5 0.2 3 23 949 971 947 971 0.95 17 22 0.00065 0.058 14.5 0.4 3 20 978 995 976 999 0.90 18 22 0.057 5.1 8.4 0.5 1 23 1004 1027 1004 1027 0.97 19 22 0.00048 0.043 14.9 0.2 2 23 1033 1055 1033 1055 0.94 20 22 5.3e-05 0.0048 17.9 4.7 1 23 1059 1082 1059 1082 0.97 21 22 0.0015 0.13 13.4 0.3 2 23 1089 1110 1088 1110 0.96 22 22 0.037 3.4 8.9 1.9 1 23 1116 1139 1116 1139 0.94
Sequence Information
- Coding Sequence
- atggAGTATAATGAGTTAGCTGTGAAGGAGAGCCCCGGCTTATGCCGCTGTTGTCTCTCGGAGGGATGCTACAAGGACTTGGGCACTGAATATACATGGATGAACGAGACTGAAGTTTATGCAGATATGCTTATTGACTGCTTCGATGTTGGGATATCCCAACACAACGATGGCCCCAATGGTCCGAAGAGGCTCATCTGTGAGGTGTGTATCACGAGACTCAGGGACGCGTGCAACTTCAAGAAGCAAGTCCTGGACAGTGAGAAGAAGTTTGTTGATATGCTCGGACGGGGAGCGTTTAAAACTAAAGTCCTAATATACGAGAATGAGATGAAGTCTGAAGCCGTGGAGGAGATGGCTCTAGATGAAGATGACCTGGACAACACTGAGGTGGAATACCTGGACGTACTCGACTACACTCCAGAGGAGGAGATAGTCAAGTTTGAAGACCTAGAACCTTCCATGGCTGAAccctcatcatcatcatcaacggTGGTGAAGAAGAAAGGCAAAACCAAGAAGGAAACAGCGGAACCTGAAAAGAAAACGGCCAAGGAGAAGCCGAGAAAAACTAACAAAGgtGGCTTCGGCCCCTCGGGCGAATCCATGGAGGAATGTAACACCATATCCTCCATAATGCGTAATCGACGCATCAAACATAACGCCATTACCATACTGCAATATTCAACAGCGGTGCCCTTCAAATGGTTCAGGCACAACTACTTGTGTTTCTTTTGCCATTACACACAAAAGACTTACGAATCCATCAAAGAACATACACAGAGCCAACACAAAGAACCGAACATAAAGTCCGCTGTATCGTTCTTGAGACGAGATGAAAAAGTAAAGATAGATATCAGTGACTTAGAATGTAGACCTTGCAACGAGAAAATTACTGATTTAGACTCATTCGTTGATCATTTGAAGATTAAACACAATGAAAAGTTCCATATAGGAGGGTATGGTGTAGTGCAGTACAGGATATCTCCAGGCGCGTACCGGTGCGGTATTTGCGATAAAGAATACCAATATTTCGTTAGACTCAACGAGCATATGAATGAACACTACGGCCAATACATTTGCGATCTATGCGGCAGAGCGTTTCTGAGCTCGGATAGGCTACGAAGCCACGCGCTATCACACACTTCCCCGATCAAGTGTACCGTTTGCGAAATGAGCTTTGAAACTGTAATTTTGCGGAAGCAACACGAAATAAAGATTCATGGGAAGCAGAAAATCGTGAAATGCCATTATTGTGAAGAAAAATTCACTTGTTACACAGCTAGGAAGTTGCACCATAATTCCGCACACGGAATTGCAATGCAGCAATACAAATGTCCAGAGTGCGATAAAGTGTTTCACGTGCTGAGCAAAATGGAGAAGCATTTAAAGCAAGTGCATATAAAGGAGAGGAATTTCCCGTGCAATTATTGCGAAATGAAGTTCTTCACTAATACTAAACTTAATGAGCATGTCATAAGTCATACGGgtgctaaaatattttcttgtgaTGTCTGCAATAAGCGATTTGCGAGGAAAAATGGTTTGAAAGATCACATGAGACGGCACAATGATGTGAAGAGGTTTAATTGTAATGAGTATATAAAAACGAAGAAATTAAAACGAAGCGAAACGTCCTCGATGCGTAGAAGGAAAAATCTAGAAATATTGTTTAACAACACGTCCGTGGTACCTTTCAAATGGCGCGGGAAGTATCTATGTTTCTATTGTAGTAAAGACGTAGCTGATTATTCCGAACTGTGGAAACACACGAAATCACACGGCAAATGCTCCATCAAAGATCATTctctaaaagttttaaaaggtGGACAAAATATGGAAATCAAAATAGATATCTCAGATATAAACTGTGAGATTTGCAGCGATACTTTCCCTTCTATAGATAAAATCGTCAATCATTTGATAGCAGTACACAAAATAGCATACGATACCAAAGTAGATATGGCTACAGAGGAGTACAGATTGATTGATCTAACTTGCTTAATGTGTGATGTAAAGTTCACGTACTTCGGCTATCTTGTATCTCATGTCAATATTAACCATCCGAAGAATTGTCTCATTTGTGATAAGTGTGaccaaaagtttaataagaagAGAGATCTTTTCTCCCACGTCAAAAATTATCATAGGGAAGGTGGGTACAAATGCGATTATTGCCCGCAGAGTTTCAGTTCCCTTAATATTTTGAGAAAACACAAGAGCAATAGACATGTGGCCAAATGCAATGTGTGCCAACTGAGGCTACCGTCAGCAGTTTTAAAGCAAAAACATATGGAAATGGAACATCCAGACGATGGATGCCTTCAATGCGACAACTGTGATAAAGAATTTCACACGAAACAAGGTCTCAGGATGCACGTCAGGAAATGTAAAGAAGACTTAGATTTTACCGTTAAAAAGGAAGATTTTTCAATGGACCTCGACCAAAATTACGATCTAATTAAAAGGCCAAGCGTGAAACGATTGCGAGAAAATATAGTGATTGTCATCAATATGTCGACTGCGATACCTTTTAACTTTTACAAGAAcaaattcaattgtttttactgTTGCAAAGACTTTCCCGATTCAGATTTGATGAGAGAACACACGGTTCTAGAACATCCCATTTGTGACGTCAAAGATGATTGTATCAAGAAGTGTAAGGAATCCGTCGCTTGCGTCAAAATTGATATCTCCACTTTAGCGTGCAAAATTTGCTTCGAATCTATGAGTGATTTGGATAGCCTCATAGACCATCTGATGGTTAAACATAATGCTAACTACGACAAATCTATTACAACGTGCCTGCAGCCTTACAGATTAATCAAAGACCACATGGCTTGCCCGAACTGTCCAGATGAAGTGTTCAGATTTTTCGGCACGTTGCTAAAACATATGAACAAAAATCATACtaacaacaatattatatGCGTTTATTGTGGGGAAACTTTTAGAAGGGATCAGAATTTGAGAGTTCATATTTGGAGGCACCATAGAGACGGCAGGTTTAAGTGCAATCTTTGCGGAGCAGATTGCAATATACCCTCAAGATTGTACATGCATATGGCCAAGGCTCACGGGGTCAGAGCTGCAAAATGTCCGAAATGCCCAGAGAGTTTTGCCACCCAATACCTTAGACAGAAGCATTTGATCGAAGCCCACGATTCAGGACACAAATGTTCCTACTGCGGAAAATTATTCACAAGGAATTCTTTCATGAGAGATCACATAAGAAGAACGCACTTGAAAGAGAAGAACGTAGAATGTGCAATATGCAGTATGAAGTTCTTTAACAATATACTACTTCGAAGGCATATGGTCAGACATAGCGGGGAAAAGAACTTTCATTGTGAAGTGTGCGGCGAGAGATTCTTTTGGCGGAAAAGTTTAAGGACGCATATCGTTAGGAATCATAAACAAATTGAATCTATGCACGATTTGTAG
- Protein Sequence
- MEYNELAVKESPGLCRCCLSEGCYKDLGTEYTWMNETEVYADMLIDCFDVGISQHNDGPNGPKRLICEVCITRLRDACNFKKQVLDSEKKFVDMLGRGAFKTKVLIYENEMKSEAVEEMALDEDDLDNTEVEYLDVLDYTPEEEIVKFEDLEPSMAEPSSSSSTVVKKKGKTKKETAEPEKKTAKEKPRKTNKGGFGPSGESMEECNTISSIMRNRRIKHNAITILQYSTAVPFKWFRHNYLCFFCHYTQKTYESIKEHTQSQHKEPNIKSAVSFLRRDEKVKIDISDLECRPCNEKITDLDSFVDHLKIKHNEKFHIGGYGVVQYRISPGAYRCGICDKEYQYFVRLNEHMNEHYGQYICDLCGRAFLSSDRLRSHALSHTSPIKCTVCEMSFETVILRKQHEIKIHGKQKIVKCHYCEEKFTCYTARKLHHNSAHGIAMQQYKCPECDKVFHVLSKMEKHLKQVHIKERNFPCNYCEMKFFTNTKLNEHVISHTGAKIFSCDVCNKRFARKNGLKDHMRRHNDVKRFNCNEYIKTKKLKRSETSSMRRRKNLEILFNNTSVVPFKWRGKYLCFYCSKDVADYSELWKHTKSHGKCSIKDHSLKVLKGGQNMEIKIDISDINCEICSDTFPSIDKIVNHLIAVHKIAYDTKVDMATEEYRLIDLTCLMCDVKFTYFGYLVSHVNINHPKNCLICDKCDQKFNKKRDLFSHVKNYHREGGYKCDYCPQSFSSLNILRKHKSNRHVAKCNVCQLRLPSAVLKQKHMEMEHPDDGCLQCDNCDKEFHTKQGLRMHVRKCKEDLDFTVKKEDFSMDLDQNYDLIKRPSVKRLRENIVIVINMSTAIPFNFYKNKFNCFYCCKDFPDSDLMREHTVLEHPICDVKDDCIKKCKESVACVKIDISTLACKICFESMSDLDSLIDHLMVKHNANYDKSITTCLQPYRLIKDHMACPNCPDEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNLCGADCNIPSRLYMHMAKAHGVRAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECAICSMKFFNNILLRRHMVRHSGEKNFHCEVCGERFFWRKSLRTHIVRNHKQIESMHDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -