Tcom010826.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292363.1:11564612-11572716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0003 0.027 15.5 0.2 2 23 19 40 18 40 0.94 2 19 0.0012 0.11 13.6 2.1 1 23 68 91 68 91 0.98 3 19 0.00061 0.054 14.6 0.1 1 20 109 128 109 131 0.96 4 19 0.0038 0.34 12.1 0.3 1 20 229 248 229 250 0.94 5 19 0.038 3.4 8.9 0.2 1 23 255 277 255 277 0.94 6 19 0.0016 0.14 13.3 1.2 2 23 311 332 310 332 0.97 7 19 3e-07 2.7e-05 25.0 0.1 1 23 338 360 338 360 0.99 8 19 0.00082 0.073 14.2 0.2 1 23 366 389 366 389 0.96 9 19 3.4 3e+02 2.8 0.0 1 23 395 418 395 418 0.90 10 19 6.1e-05 0.0055 17.7 0.7 1 23 425 448 425 448 0.95 11 19 0.011 0.94 10.7 4.2 1 23 455 478 455 478 0.94 12 19 8.7 7.8e+02 1.5 0.1 1 21 484 509 484 510 0.67 13 19 0.002 0.18 12.9 1.8 1 23 513 536 513 536 0.97 14 19 0.55 50 5.3 0.0 2 23 561 582 560 582 0.94 15 19 0.062 5.6 8.2 0.3 3 23 589 610 588 610 0.94 16 19 0.00035 0.031 15.3 1.3 1 23 616 639 616 639 0.95 17 19 0.00041 0.037 15.1 0.1 2 20 644 662 643 663 0.93 18 19 5.6e-06 0.0005 21.0 0.9 1 23 670 692 670 692 0.97 19 19 0.00016 0.015 16.4 1.2 1 23 697 720 697 720 0.96
Sequence Information
- Coding Sequence
- atgGGCGAAGGGCTCCTAATTGTTAAACTAGAgagatttgatttcaataagttgAGATGTGGTGTTTGTAACAAGTTCTTTGCTAGCAGTGCGAGTTTAGAAACACACAGTCAATGGCACAATGCAAACAAGTGCTTGGAGACACCCAATATACTTGGATATTTCACAAGTGTACAAGTACTGGTGGACCGGGTGTCCATATACAAGTGTGGGCTGTGCACGAGTGCATTTATCAACCTCGATCACTTCAAAACACACCAGTCCACCGAGCACAATGCCAACAAACACAGGCGGGAGCAGGGCGCGGGCGGCATCCCGAAGCCGTACCAGTGCCCGCAGTGCCCGCGGCGGTTCGCGGCGCGCGCCACGCTCCGCGCGCACCGCCCCGCGCACCGCGCGCCCCCCCACGAGTGTGAGTGCGGCCTGCGGTACTACTGCCCGCGCGACCTGCGGGCGCACCGCGCGCTCGTGcaccccgcgccgcgccgctgGGCGCCCGCCTCCTCGTACGCGCCGCCCGACATCAAGAACGAGTtcgcgcgccgcgcgcgccccgcgccccccgcgcgcCCCGACAGGGTGCACAACTACGCGCGCGCCAAGGGCCGGCGGGCCGGCGCGGGGGGCGCCGCCGGGGCCCGCAAGCGGGAGGCCGTCCTCTACCCCAAGAACGAGAACGGCGAGTACGCGTGCGAGCGGTGCGGCGACGCGTTCCGGCGGAAGGACGCGTTCGAGCGGCACGTGTGCGCCACCGGCGAGCTGCACGCATGCGCGCGCTGCCCGCTCGCCTTCCCCGACCGGCGCCGCCTGCGCGCGCACGCCGCGCGGCACGACCGCGCGCCGGTTgacgccgcccgcgccgcccgcgccgcccgcaccccccgcgccccccgccgcccgcgcggcCCGCCCGGCCCCGCGGGGCCCGTCTCGTGTAAATATTGCGGCAAAGTGACGAAGGACCGCCACGTGATGGCGCTCCACGAGCGCACGCACACCGGCGAGAAGCCGTACGAGTGTCCGTTCTGCGGGAAACCGTTCGCCGACCCGTCGGCGTTCCTGCGCCACAAGCGCATGCACCTGGGCATCAAGCCGTACCGGTGCGCGCACTGCCCGGCCGCCTACTCGGACAAGAGCGCGCTCATCGGGCACACGGCGCGCAAGCACGCGCCGCGCGCGCAGTTCCCGTGCGGGCAGTGCGCGCACCGCGCCGCGTCCGCCGCCGCGCTGCGCCTgcaccgcgccgcgcgccacgCGCCCGACCCGCAGCGCTACGTGTGCGCGCACTGCAACAAGGGGTTCAGCCTCAAGCAGTACCTGCGCGTCCACATCCAGGGCGCGCACATGCCGCGCGCGTACCGCCACGCGTGCGAGACGTGCGCGCGCCGCTTCGAGCACGCGTGCCAGCTCCGGAAGCACGTGCGCGAGGCGCACGAGGGCGAGCGGCGGTTCGCGTGCGCGCTGTGCCCGAGCCGGTTCGCCGCGCGCGTCACGCGCGACAACCACGCGCTCACGGTGCACGGGCGGCGCGCCGCCTTCCAGTGCGACCACTGCCCCGCGCGGTTCAAGATCAAGTCGTACATCTTGAAGCACATCGTGACGAAGCACGTGTTCGTGGAGTGCGGCGCGTGCGGCGCGCGGCTGCCCGTGTACCGCGGGCTGGCGGCGCACGCGTGCCTGCGGTGCGCCGTGTGCGGCCGGCTGCAGCCGTCGCGCGCGCGCCTGGCGGCCCACATGCGGGCCCACCTGCGCGCGCCGCGCGAGTGCGGCGCGTGCTACCGCCAGTACTTCTCGCGGGGGGCGCTGCGGCGACACGAGAGGCGGGCGCACGGGCCGCGCGCGGACCACGTGTGCGACTACTGCGGCCGGCGGTTCGACACCAAGCCGAAGATAACGTCCCACATCACGCGCGTGCACATGATCAGCATGTACTGCCACATCTGCGGGCGGCGGTTCGTGTCGCAGGCCGAGTTCGCCGCGCACAAGGCCGCCTGCGCGCCCGACAGGTTCCCTTGCCACATTTGTGACAAGAAGTTCTCGGTCAGGGAGGGTTTGCGATCGCATCTATCGGTCCATTTGGGGAAGAAGTTTACCTGTGATCTGTGTAACAAAAAAGTTTCCAATAAGAGTTCCATGGCGAGGCATTTTAGATTAGTTCACAAGATGAAACAATAG
- Protein Sequence
- MGEGLLIVKLERFDFNKLRCGVCNKFFASSASLETHSQWHNANKCLETPNILGYFTSVQVLVDRVSIYKCGLCTSAFINLDHFKTHQSTEHNANKHRREQGAGGIPKPYQCPQCPRRFAARATLRAHRPAHRAPPHECECGLRYYCPRDLRAHRALVHPAPRRWAPASSYAPPDIKNEFARRARPAPPARPDRVHNYARAKGRRAGAGGAAGARKREAVLYPKNENGEYACERCGDAFRRKDAFERHVCATGELHACARCPLAFPDRRRLRAHAARHDRAPVDAARAARAARTPRAPRRPRGPPGPAGPVSCKYCGKVTKDRHVMALHERTHTGEKPYECPFCGKPFADPSAFLRHKRMHLGIKPYRCAHCPAAYSDKSALIGHTARKHAPRAQFPCGQCAHRAASAAALRLHRAARHAPDPQRYVCAHCNKGFSLKQYLRVHIQGAHMPRAYRHACETCARRFEHACQLRKHVREAHEGERRFACALCPSRFAARVTRDNHALTVHGRRAAFQCDHCPARFKIKSYILKHIVTKHVFVECGACGARLPVYRGLAAHACLRCAVCGRLQPSRARLAAHMRAHLRAPRECGACYRQYFSRGALRRHERRAHGPRADHVCDYCGRRFDTKPKITSHITRVHMISMYCHICGRRFVSQAEFAAHKAACAPDRFPCHICDKKFSVREGLRSHLSVHLGKKFTCDLCNKKVSNKSSMARHFRLVHKMKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -