Tcom004613.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292356.1:10896416-10902704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.009 0.81 10.9 3.1 2 23 203 225 202 225 0.95 2 29 0.00081 0.072 14.2 0.3 2 19 253 270 252 273 0.93 3 29 2.3e-05 0.002 19.1 0.5 2 23 303 325 303 325 0.97 4 29 6.6e-05 0.006 17.6 0.6 1 23 387 410 387 410 0.98 5 29 0.008 0.71 11.0 0.2 1 23 423 445 423 445 0.96 6 29 5.7e-05 0.0051 17.8 1.2 2 23 477 498 476 498 0.97 7 29 0.00034 0.031 15.3 3.5 2 23 540 562 540 562 0.97 8 29 4.8e-05 0.0043 18.0 2.3 1 23 612 635 612 635 0.97 9 29 0.00096 0.086 13.9 0.1 1 23 689 711 689 711 0.97 10 29 0.0001 0.0092 17.0 4.6 1 23 722 744 722 744 0.98 11 29 0.071 6.4 8.1 1.9 2 23 756 777 755 777 0.96 12 29 0.006 0.54 11.4 1.1 1 23 787 809 787 809 0.98 13 29 0.00073 0.066 14.3 2.6 1 23 837 859 837 859 0.97 14 29 6.1e-05 0.0055 17.7 4.4 1 23 870 892 870 892 0.98 15 29 0.00047 0.042 14.9 2.5 1 23 900 922 900 922 0.98 16 29 0.0015 0.14 13.3 0.2 2 23 942 964 941 964 0.97 17 29 1.2 1.1e+02 4.2 0.9 1 23 982 1004 982 1004 0.90 18 29 0.14 13 7.1 5.1 1 23 1011 1033 1011 1033 0.98 19 29 0.006 0.54 11.4 0.5 2 23 1044 1066 1043 1066 0.95 20 29 0.0035 0.31 12.2 0.1 2 23 1089 1110 1088 1110 0.95 21 29 0.17 15 6.9 1.4 2 23 1153 1175 1152 1175 0.95 22 29 0.0022 0.2 12.8 0.2 2 23 1191 1212 1190 1212 0.95 23 29 0.13 12 7.2 2.9 5 23 1222 1240 1219 1240 0.94 24 29 0.012 1 10.5 0.8 2 23 1251 1273 1250 1273 0.95 25 29 5.5 5e+02 2.1 6.1 2 23 1290 1308 1290 1308 0.88 26 29 0.37 33 5.8 2.1 2 21 1312 1331 1311 1332 0.93 27 29 0.21 19 6.6 2.5 2 23 1380 1401 1379 1401 0.95 28 29 0.029 2.6 9.3 0.3 2 23 1412 1434 1411 1434 0.94 29 29 0.37 34 5.8 3.8 2 21 1472 1491 1471 1492 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTTTGCCTAAAGCTCGGAGATTTTTACTCCATCTTTACGGTGGACAATGCCATCCAACTATCGGAGATGGTGATGGAATGTACCAAAATAAAGGTATATGAAGGAGATGGGCTACCGGACAAAGTGTGCTCAGAATGCATACAAAAACTAAGTAGCGCTTATATCTTCAAGCAGCAATGTGAACGTGCTGATGAAGAACTGCGGCGCAACTACATACCTCCACCAGGATTCAGCGTCAGTCCTCCTCCACCCAATAGACAAAGCAGTGATTCAGCATTCTCAACACACACTGACATCTCCAATCGTAAATCCTCTTTGAACGACAGCAAGTCGACGCCGGTCAGTAGAAGTAGGAAGAGGAGTGTTGAAAGTGACAATGCATCTATTGGGAGTCGATCACAAGACTACAGTAGACCTACTAGCTCCAAACGGGTGGAGGAATTGCGTCGATCTCAAAAGCGGCCGCGCATGTCTCCCAACAACTTCCAAGATTCAGATTACGATGATTTCGGCGCCGACTCCAGCTACATACCGGAAACGGACGATTCGGACGAACCACTCATGAAAAATGACGATAACCAGTGTACGATATGCCTCAAAACGTTCAAATGGAAGAAATCTTTGAAACATCACATGGAAAATGTTCACAAAAAATCCGCAACCAAAGAGGCGACGGCCGCCGACACTCCCAAGAAGAGCGCCAACAATGAACCAGAAGATGAAAAGTCAAGTTGTGACAAATGCGGCAAAACGTTCAAGTTGAAAATCATGTTGAAACGGCACTCAGAGATTTGCGGAAAGTCTCCCGATATATATCCACGGAAAGAGCTATTAATATCTCTGGAACCGATCGACGGCATGACTAGTAGTAAGAAACCGACTTGTGAGTATTGTACGGCCACATTCAAGACAATGGACAatttagaaaaacatttgcgAGTCGTTCATGCTGCAGCACTCAAGAAGAATGCAAAACAAGAAGGCGTCTCGTCCCAAAACACGAAATCATCGCGAGTGAACAGCGAGACTAAAGTAGTAGTGCCATGTATTTACTGTAATAAACCATTCTCTAACTATCAAGACCATAACGCGCATTGTAACGTATGTCAGAAGATCGACTACCGCAGCGAGTACCAGTGTCCGTTATGTGAGAAGGTGACGGTCAATAAGAGTTCTTATTACAGTCACCTTAGAAGTATACATTTCATGGTGCCGAGGAAATCTGACGTTAGCAATGAATTCGAATGTAGAATGTGCAGTAAAAAGCTGCCGACACAGGATAAGTTGATCAGCCACTTGGCGGCGCACATGTCCAATATCGACGAAGACGCTGATGACTTTGAATCGAGACCAAGCCAAGAAGATTCAATGAACAGTTCGCAACTATCACGAGGTCCTCTGAAATGCGGGATTTGTGACAAAgaattcaaatataaaaaatctttggAATCTCACGAACAGAAGCACGCGGCGGAGGGGGTTGACGTGAAGGAGGAACCGCCTGATAAACCTTCCAATAGTCTGCTGACAGAGGCTCAGGCGACGCAGCAGTCGGACTCGGAATCTAGTCAAGACGAAGCTGAAGACAACACGTGCCACATCTGCGAGAAACAGTTTTCCTACAAACGTGTGTTAATACAACACATGAAAACGAAACATAACCAGTGTTCGGGCACGAAGCGGGCGAAAATAAACCTCAAAGACTGCATGGTGAAGTGTCTCATTTGTGACGTGGAAATGAAAGTGGGCGCCATCAATGAACACAACCAGAAGCACATCTCGGCGAACCTCAAGCCGAGGAATGTGTACACGTGTGCAGAGTGCAAACAGAAGTTCAAGAGTTGCAGCAATTTGGCCAaccatattaaattaattcacaGGTTAAAACAGCAGCATGTGCCAAAGAAATACATAGGCGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACAATGTTCAGACTCACAACGGCTTCGGTGAGGTTCCGCCGACAGCGGCGGCGCTCGTGAACCTCAGCGGGTTCACGTGCCCCATTTGTGGGAAGCAAATGCCCACACTCATATCTCTCAAGAGACACGTCAACTGGCACTCCAGTGTTGGGGATAATCTAGAGAAGAAATATGAGTGCTTCGTTTGTAAAGAGAGTTTCCGCTTCCAGAGTCACTACAAACTCCACATGCGTGAACACTACACCGACACTAACTTGGATCCTCAATACCTGACGTGTACTATTTGCAACCGTAAGAGCAAACACTTGCGCGCGGCGCAGGCGCACATGAACTTCCACAAACAGACTCGGTTCCAGACCAAAGACTACCAGTGCTCGATATGCAAGCGCGTGTTCCAGTTCCGCAAGGTGTACCTCTCGCACATGGCCATCCACTACAAGAGAGGTGAGTCCGCTCACAATACAGTGGTAGGAGACGTCACGCCCAACAACGCGAAGGCCTCCCTAGACGGCACCTTCACGTGTCAGCTGTGCGGCAAAGTGTGCGACTCCGAGACATCTCTCAaacatcatctcatttggcACAAGTCCAAAACTCTCCTCTTCGGCGCTCGGCACGAGTGTCAAATATGTCAACTGCAATTCACTAACAAACGACACCTCGAGCTGCACATTCGCACACACTACGAAAGTGAAGACGGGCCGTTCAAATGTACCGTTTGCGGGAAAGGTTTCACCGACGAGGACTACTGCAGACGCCACCTGAAGGGTCACAACTTCGACCACTCGTCGCATCAGAAACGATTAGAGAAATTGAGGAAGGGGAAAGTGAAGTGCCCGATCTGTTTGCGATTCTACCCCGACTTAGTGAAGCTCATCCGTCACCTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGGAGGACCCGGACGCGCCGCCGCCCAGCTACTTCTCGTGCAAACTGTGCGCCAAGGTGTTCCTCAACGAGGTGCGGCTGAAGCACCACGAGGAGGCCCACATGCGCAAGCCCTGCTTCTTCAAATGCAAGTTCTGCGGCAAGAAGACGATATCGCTCAAGAACCACAAGCTGCACATCAAGAGCCACCTGACGACCAAGTACACGGACAACCCGCTGAAGTGCCCTCAGTGCGACGAGGTGTTCGTGCTGGGCTACGCGCTGCACCACCACCTGCGCGACGCGCACGGCACCGCCGAGACGTGGATCGCCGAGCGCGCCGACCAGCCGCCCGCCGGCCCGCTGCAACACCTGCAGTGCGCCGTCTGCTACAAGGTGCTCGCCTCCAAGGGCAACTTCGAGCGCCACATCGACTACCACAACTCGCTGCGCTGCAACTACTGCTTCGACTACTTCAGCTCCTCGCGCTTCCTCGACGGACACCTCGCCTTCAGCTGCGACAAGAAGAAGTTGCTCGGCGACGCCGACAACTACCCCAAGAGGGTCAAGTGCGAGATTTGCTACAAGGCGTTCAGCATCCAGGTCAAGTTGGATTGTCATTTGCGCACCCAACACAGCATCAAGGTCTCCCGAGAGGCGTCCGCGGGCAAGGCCGAGATCGTCTGCGATTATTGTTTCAAAGTGTTCGAGAACGAGTACGCTCTCAGTACCCATAAGATTTACCACCGCACGATCGGCTACTACGGATGTATCTATTGTCCGAGGAAATTCAATACCCAGACCGGTTACCGCAAGCATAAGAACCATCACTTCTCGCAGCTGAATGTCGACGACCCGACCAAGTGCGAGCACTGCGATGAGACGTTCGTGGCGTTTAGAGATATGATATACCACATGAGGGACGTACATAACGACGACAAAGAGTGGATCGTCATGCCGAAAGATTCCATAGAAGAAACGTGCCACTTGTGCAATAAGACTTTCTTCAATTTACACAAACATCTCGCGTATCACGAGGAGAACAAATGCAAAAAGTGTAACGAATATTTCACATCGACGGCAGACTACGACAGTCACCTGTGCAGTATCGTGAGCGACGACGAGGAGGCGATCGAAGCGGGCAACCCCACGCAGGTTTACGAGGAGTGCACTTTCTGTTTCAAACCGATCACTAAAAAAGATTCCAAGAAGAAGCATGACATGTTACACAAGTCTTCCGGAGCCATCTCTTGTCGTTTCTGTCACCTCAAATTCAAAACTATGGACGCCTTCAATATTCACGCATTTACGCATAGAAGCAGAAAGTATGATAAGAAACCGATCAAATGTCGTATTTGCAAGGAGAAGTTTGTGAAGTATGGTCCTTTTATTAAGCATATGGTATCCGTGCATAAAACTTCTAAGAAGGTGCATTACAGAGCGTTAGTGAAGCCGGATCGCTGTGTCATCTGCGGCGGTGACTTCCCTAACCTGCACAATCATTATCGCGCTCATTTACTCAACCAATGCCTGCAGTGCCGGAAATATTTCACATCGACGAGACTCTTTAACCGTCACCAATGTGATACTGAGGATTCGGATCCGTCGAAAGTTTTTACGTCCGATGAAAACTTGCGAGTGTTGATAAACTCGTATGTACCGAAAGATATGAAAGACGACGAGAAGTTTTACGGTTATACGGACGATGAGGAGGATGAGGAACCGCCAGTACCGGTGCAGAAAGTGAACAACACCGTTGAAACGAAAGTCGTGAAACAACCCGAGCGTACAATAGATCCTCAACTAGAGGAGGATGAAAAGAACTTGCATATGATGGTGCAATCGCCGATAATATCGGACGTACTGTCTCTGTACCAACAAGCTAATGACCTAAGCAACCAGGACAGCAATAGCCAAATAAGTGAGTCGTGTGACGTCGTAAACCTAACTGATGACGATTCAATGGACGCCAGTGAAATAGCACCTATCGTCGTAATCGATGACTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAIQLSEMVMECTKIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADEELRRNYIPPPGFSVSPPPPNRQSSDSAFSTHTDISNRKSSLNDSKSTPVSRSRKRSVESDNASIGSRSQDYSRPTSSKRVEELRRSQKRPRMSPNNFQDSDYDDFGADSSYIPETDDSDEPLMKNDDNQCTICLKTFKWKKSLKHHMENVHKKSATKEATAADTPKKSANNEPEDEKSSCDKCGKTFKLKIMLKRHSEICGKSPDIYPRKELLISLEPIDGMTSSKKPTCEYCTATFKTMDNLEKHLRVVHAAALKKNAKQEGVSSQNTKSSRVNSETKVVVPCIYCNKPFSNYQDHNAHCNVCQKIDYRSEYQCPLCEKVTVNKSSYYSHLRSIHFMVPRKSDVSNEFECRMCSKKLPTQDKLISHLAAHMSNIDEDADDFESRPSQEDSMNSSQLSRGPLKCGICDKEFKYKKSLESHEQKHAAEGVDVKEEPPDKPSNSLLTEAQATQQSDSESSQDEAEDNTCHICEKQFSYKRVLIQHMKTKHNQCSGTKRAKINLKDCMVKCLICDVEMKVGAINEHNQKHISANLKPRNVYTCAECKQKFKSCSNLANHIKLIHRLKQQHVPKKYIGELADFCEVVVTKAEPLDNVQTHNGFGEVPPTAAALVNLSGFTCPICGKQMPTLISLKRHVNWHSSVGDNLEKKYECFVCKESFRFQSHYKLHMREHYTDTNLDPQYLTCTICNRKSKHLRAAQAHMNFHKQTRFQTKDYQCSICKRVFQFRKVYLSHMAIHYKRGESAHNTVVGDVTPNNAKASLDGTFTCQLCGKVCDSETSLKHHLIWHKSKTLLFGARHECQICQLQFTNKRHLELHIRTHYESEDGPFKCTVCGKGFTDEDYCRRHLKGHNFDHSSHQKRLEKLRKGKVKCPICLRFYPDLVKLIRHLRRTHPESKMIKEDPDAPPPSYFSCKLCAKVFLNEVRLKHHEEAHMRKPCFFKCKFCGKKTISLKNHKLHIKSHLTTKYTDNPLKCPQCDEVFVLGYALHHHLRDAHGTAETWIAERADQPPAGPLQHLQCAVCYKVLASKGNFERHIDYHNSLRCNYCFDYFSSSRFLDGHLAFSCDKKKLLGDADNYPKRVKCEICYKAFSIQVKLDCHLRTQHSIKVSREASAGKAEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCIYCPRKFNTQTGYRKHKNHHFSQLNVDDPTKCEHCDETFVAFRDMIYHMRDVHNDDKEWIVMPKDSIEETCHLCNKTFFNLHKHLAYHEENKCKKCNEYFTSTADYDSHLCSIVSDDEEAIEAGNPTQVYEECTFCFKPITKKDSKKKHDMLHKSSGAISCRFCHLKFKTMDAFNIHAFTHRSRKYDKKPIKCRICKEKFVKYGPFIKHMVSVHKTSKKVHYRALVKPDRCVICGGDFPNLHNHYRAHLLNQCLQCRKYFTSTRLFNRHQCDTEDSDPSKVFTSDENLRVLINSYVPKDMKDDEKFYGYTDDEEDEEPPVPVQKVNNTVETKVVKQPERTIDPQLEEDEKNLHMMVQSPIISDVLSLYQQANDLSNQDSNSQISESCDVVNLTDDDSMDASEIAPIVVIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -