Tcom022975.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292380.1:3405036-3406963[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-09 4.3e-06 26.9 0.1 5 39 22 56 21 59 0.91
Sequence Information
- Coding Sequence
- ATGCCTAGAAATTATCGACCCAAACCGGGAGCGAAATCTCTTAAAAAACATGACGTAGTCATAATTAATCAAGCTTTACTAGACATATCAGCTGGAAACACATCGATACGACGTATTGCTGAGAAATATGGAATTTCATATTCAGTTTTACAGAGACGCAATAACAAATCAGTGAAACCCCATGGTGGCCAAACGGCAATGACGCCAGAGGCCGAGgcttttattgtaaaaaatttaaatatttgtgcgGATTGGGGTTATCCGCTGGACCAAAACGATTTAAGAtatattgttaaaatgtaTCTTGATACATCAAACATTACTGTGAAAAGGTTTAAAAACAACTATCCAGGGCCTGATTTTGTTGAGAGCTTTCTGAAACGACATAGTGACAAAATATCAAAGCGGATATCTCAAAACATCAAACGTTCGAGAGCAGAAGTGTCACCTGAAATGATGAAAACCTACTTTGCAGAACTAGAAAAGTCACTTGAAGGCGTACCTCACTCTAACATAGTCAACTACGACGAAACAAATTTATCAGATGACCCTGGGCGACCAAAAGTCATCGTTCGGCGTGGATATGTGGCTTTCTTCCGACCTATGAAACAGGCATGGCGGAGTATTTTGCAGAAGTGGAAAGAAACTGATGGACGGAATTTAAGCTCCATTCCAAAGGGATGTTTTCCTCGCCTTTTGAAGCTATTGATCAATCAGCTTAATATTAACGCTAAATCCAATATACGTTCtggttttaaaaaaactgGTATTGTTCCTTTAAATAGTGAAGAAGTCATATCTCGCCTTCCAAATGCCGAAATTGATGAGACTGCCCCAGATGCTGTGAACGAGTCATTTGTGaagtatttaaaagaaatgcgTTATGGAACTTTGGATATTACTGAAccaaagaagaaaaagaaattaaatgttGTAGCTGGTAGAAGTGTGTGTCCGGATGAATTAAATAGTGAAAATAGACCCGAAGAAGATGAGCAACAAACTACAAGCAATATTGTATCAGTGCAGAAAAAAAAAGGATTAGGAAAAAAGTCCAAACCGCAATCTTCAAACAGTCGCGTTATTGAAAAATTTATTCCTTTGTCCCTAAATACACAAATACCTCTAAATCCATCAATCAGTAGTACTAGCACTTCCACTATGAATGAGATTCTTGACATGGATATAGAATCGATACCTATTGTTTTCGAGGATGATCTATTAGTTGGAAGAGAAGAAATTTTGATAGAACAGACAGAAACGGAACAAGACACAAATGTAGACAAAGATGTCAGCATTCAAcaagtaaacaaaaaagagGCTATAAAGGAGTTTAAGGTCAAAATATTATCTGACGAAATAGTTACATCGAATCGTATTcttacaaagaaaaagaagacagaacataaaaatatggtgTCCACAACAAAAAAACCCAAACTGTTTTTTACTCCAAATGCAGCTCCGATCCCAAGCCGAAGAGGTTCGGAAGTGagtttaaattactttaataatgcTGAAGAAATTATGAAGATTTTAGAAGAAGAGTAG
- Protein Sequence
- MPRNYRPKPGAKSLKKHDVVIINQALLDISAGNTSIRRIAEKYGISYSVLQRRNNKSVKPHGGQTAMTPEAEAFIVKNLNICADWGYPLDQNDLRYIVKMYLDTSNITVKRFKNNYPGPDFVESFLKRHSDKISKRISQNIKRSRAEVSPEMMKTYFAELEKSLEGVPHSNIVNYDETNLSDDPGRPKVIVRRGYVAFFRPMKQAWRSILQKWKETDGRNLSSIPKGCFPRLLKLLINQLNINAKSNIRSGFKKTGIVPLNSEEVISRLPNAEIDETAPDAVNESFVKYLKEMRYGTLDITEPKKKKKLNVVAGRSVCPDELNSENRPEEDEQQTTSNIVSVQKKKGLGKKSKPQSSNSRVIEKFIPLSLNTQIPLNPSISSTSTSTMNEILDMDIESIPIVFEDDLLVGREEILIEQTETEQDTNVDKDVSIQQVNKKEAIKEFKVKILSDEIVTSNRILTKKKKTEHKNMVSTTKKPKLFFTPNAAPIPSRRGSEVSLNYFNNAEEIMKILEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383590; iTF_00383591; iTF_00383592; iTF_00383593; iTF_00383594; iTF_01192655; iTF_01209178; iTF_00147391; iTF_00282271;
- 90% Identity
- iTF_01209178;
- 80% Identity
- -