Tcom000367.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- ttk
- Assembly
- GCA_958496195.1
- Location
- OY292353.1:4231111-4235159[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-16 4.7e-13 49.2 0.0 1 42 334 376 334 379 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAGCAGTACAGTTTGCGGTGGAACAACCACCAACCAAACTTTATTTCCATGTTCACGACGCTACTCAACACACAAACACTCGTCGACGTCACACTCGCTGCTGAAGGGAAACATTTACAGGCACATAAAGTAGTCCTTTCCGCTTGCAGCACTTACTTTCAGGCATTATTTGTGGAAAACCCATCGCGACACCCTATAGTCATCCTCAAAGATGTCACATTTTCAGATCTACGTACAATGGTTGATTTTATGTATTACGGCGAGGTCAATGTTACAGAGGAGCAGTTGCCGCAGGTGCTGGACACAGCGAAACTGTTGAAAATTAAAGGTTTAACCGAAATGCCAGACTCCACATCCCTAACAAGGTCTCAAGGAACATCAGCTGACTTCCAATCTTCCGGAGATCACAACAATGATCAACAAAGGCTATCTGCATCACCATCTTCACCTTCCATCAAACGGAGGCGACGTAGGAAGAGTTCGACCGGATCTACCTCTTTGAACATGGTGCCGGATGAAGTAAGGCATGAGGAGAACCAGACGGTGGAGTTGGTGCGTGACGGGATCACGCTGAGCAGCGTGCCGCGTCGCCGCGAGTACGACGACCGACATGACAACCAACAACAAACTGAGGCACACAACCTGAACATTGATGCACTATCGACGGTCGAGAATAATCCCACCGGCATGCCTCCAGGAGGACAGTGGATGATGGAGCACACATATCCGAGGTACTCGAACGCGTGTCTCGGGGGAGGAGGCGGAGGcggaggcggcggcggcggcaacAACGGCAACGCTCTGCAGCCGGAAGGTGGCATGTACATAAATAACGTGATCCACCCGCATATGGAGGTGGACATGAGTGAGTACACGCAGGGCCTGGGCGTGGCGGGGCCCTCGCCCGGCCCCAGCTGCGCGCCCGACGCCCAGCCCGCCCCGGACCATCAGCCGCAGATGCCCGTCAAGCGGCGCCGCACCACCAACCCACAGTCTGAAGAGAATTTCCAGAGGGCTCTGGAGGCTGTGCGCTTTGGGGGCATCGGCTTCTGTAAAGCCGCCAGGATGTTCGGAGTCAACAACAGAACGCTCTGGCTGGAATACAAGAAGAAGGGTTACCCGAACAACAGACCCAGCATCAAGAGCCGTATCAAACGTGAGCACACGACTCCACCGCCCGAGCACAAGGAGGAAATGCAGCTGCCGGAACAACAGATGGCGTTGATATGTCCACCGCACCCGGTGTCCGTAGGGTTCATAGACTCGCGGCCGATCGATTTTCCGCTCCAGGGGATGCCGCACAACTCGCCCCTCAACATTCTGGGGGTGAACTTCAACTCTATGCAATAG
- Protein Sequence
- MSQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVENPSRHPIVILKDVTFSDLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTSLTRSQGTSADFQSSGDHNNDQQRLSASPSSPSIKRRRRRKSSTGSTSLNMVPDEVRHEENQTVELVRDGITLSSVPRRREYDDRHDNQQQTEAHNLNIDALSTVENNPTGMPPGGQWMMEHTYPRYSNACLGGGGGGGGGGGGNNGNALQPEGGMYINNVIHPHMEVDMSEYTQGLGVAGPSPGPSCAPDAQPAPDHQPQMPVKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEMQLPEQQMALICPPHPVSVGFIDSRPIDFPLQGMPHNSPLNILGVNFNSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01444023;
- 90% Identity
- iTF_01444023;
- 80% Identity
- iTF_01444023;