Tcom011744.1
Basic Information
- Insect
- Timandra comae
- Gene Symbol
- -
- Assembly
- GCA_958496195.1
- Location
- OY292365.1:479291-485402[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-12 3.7e-09 36.8 0.0 4 39 171 206 168 211 0.89 2 4 8.3e-12 6.8e-09 35.9 0.2 1 39 222 260 222 263 0.93 3 4 1.7e-16 1.4e-13 50.9 0.3 2 45 278 322 277 322 0.96 4 4 1.6e-17 1.3e-14 54.2 0.0 1 42 329 371 329 374 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGTATGACACAGCGGTGGTCAAGTGCGAGCCGCCCTCCGACGAGGAAACCTTTTGTCCACAACTATCTCACGCGTTCTTCGATGACAagTCGTCAAGCGGATTCAGCTCGATTCACGCGGCGACCCCCGAGGTGGTCGCACTCAACGACGATGTCTCTTCACATTTGTTGCAACATTTACAGGTATCTGGCACTCTGGAGGAGCTGGCGCCCCCCGCGCCGGCCGGGCCCGCAGCCACCCCCGTCTGCGTGAAGCAGGAGCCCGAAGACACGCCCGCACACACACTCGAGACCCTCGAGTCCACGCATAATGCCAAGGGGTCCCTGTTACTGGAGCGACACTTGGCCATGTTGGGTCCCGGTGATAGTCCTGACTCCGCCGACTTTACGTCACTGCAGGCGGTCAAGGACGAGCCCACTTCGGAAGGAGAACAGCTGCAGCTGAGCGGCGACGAGGCGTGCGAGTcgagcggcgcgcgcgcgcacTCCGGGTGGACGCAGCGCGACATGGACGCGGCGTTACACGCACTGCGCTCCAACAACATGAGCCTTACTAAGGCGTCGGCGGCGTTCGGCATCCCGTCGACGACCCTGTGGCAGCGCGCGCGGCGCCTCGGCATCGACACCCCCAAGCGCGAGGGCGGCGCGCGCTCCTGGACCGACGGCGACCTGCGCCGCGCGCTGCGGGCGCTAAGGGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCATACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCGGCGCCGGTGTCGTGGCGGCGCGCCGACCTGGCGCGCGCGCTCGCCGCCAtccgcgccggcgccgcctcCGTgcagcgcgccgcgcgccaGTACGGGATACCCACCGGCACGCTGTACGGGCGCTGCAAGCGTGAGGGTATCGAGCTATCCCGGTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGGGAGGCGCTCGAAGCCGTCAGGATAGGCCAGATGTCCATAAACCAAGCCGCCATCCATTACAACCTGCCGTACTCCTCGCTTTACGGCAGGTTTAAGAGGTGCAAATATCAACCCTCGCAAATACCTCAAGACATGTCTCAACTCCCGGAAGCCCTCCTGCCCCCCGACATGTCGTACTACCCCCCGCCGGGCCCTCCTCTAGACTCAGACCCCCCGCACACGCCTCACTTCGGGGTGGAGTCCCCCGACTTCGTACAAGAGTATCCCCCGATGTACTACCACCAAGGTTTCAATAGTATAGCCACCAGTTGA
- Protein Sequence
- MPGYDTAVVKCEPPSDEETFCPQLSHAFFDDKSSSGFSSIHAATPEVVALNDDVSSHLLQHLQVSGTLEELAPPAPAGPAATPVCVKQEPEDTPAHTLETLESTHNAKGSLLLERHLAMLGPGDSPDSADFTSLQAVKDEPTSEGEQLQLSGDEACESSGARAHSGWTQRDMDAALHALRSNNMSLTKASAAFGIPSTTLWQRARRLGIDTPKREGGARSWTDGDLRRALRALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRADLARALAAIRAGAASVQRAARQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQPSQIPQDMSQLPEALLPPDMSYYPPPGPPLDSDPPHTPHFGVESPDFVQEYPPMYYHQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -